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[177618_at]

Description T27C5.1 /REP_DB=WormBase Gene ID /WP=CE16495 /TR=O45845 /GB=CAB04862.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 35      6grp_cgc > 54      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 20.4
(-3)
A 		34
(3)
A 		22.7
(-2)
A 		26.7
(-0.2)
A 		14
B 44.8
(2.7)
A 		46.3
(3)
A 		33.2
(0.2)
A 		18.6
(-3)
A 		28
C 27.2
(-2.1)
A 		53
(1.1)
A 		19.9
(-3)
A 		68.2
(3)
P 		48
avr 30.8
(-1.3) 		44.4
(3) 		25.3
(-3) 		37.8
(0.9) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 12.9
(0.6)
A 		18.3
(2.5)
A 		7.1
(-1.4)
A 		10.1
(-0.4)
A 		19.8
(3)
A 		2.5
(-3)
A 		17
B 2.3
(-3)
A 		52.1
(3)
A 		42.6
(1.9)
A 		2
(-3)
A 		4.2
(-2.7)
A 		31.5
(0.5)
A 		50
C 30.2
(1.3)
A 		40.2
(3)
A 		6.1
(-2.7)
A 		4
(-3)
A 		33
(1.8)
A 		19.1
(-0.5)
A 		36
avr 15.1
(-1.2) 		36.9
(3) 		18.6
(-0.5) 		5.4
(-3) 		19
(-0.4) 		17.7
(-0.7) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 7.4
(3)
A 		7.4
(3)
A 		5.9
(0.4)
A 		3.9
(-3)
A 		4
B 14.3
(3)
A 		11.4
(1.3)
A 		7.7
(-0.8)
A 		4
(-3)
A 		10
C 9
(-1.5)
A 		15.2
(3)
A 		6.9
(-3)
A 		11.5
(0.3)
P 		8
avr 10.2
(1.6) 		11.3
(3) 		6.8
(-2.6) 		6.5
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 2.4
(-1.2)
A 		6.5
(3)
A 		1.5
(-2.1)
A 		2.6
(-1)
A 		6
(2.5)
A 		0.6
(-3)
A 		6
B 0.8
(-2.9)
A 		17.3
(3)
A 		10.3
(0.5)
A 		0.5
(-3)
A 		1.7
(-2.6)
A 		11.8
(1)
A 		17
C 11.2
(2.4)
A 		12.3
(3)
A 		1.5
(-2.6)
A 		0.8
(-3)
A 		10.7
(2.2)
A 		6.4
(-0.1)
A 		12
avr 4.8
(-1) 		12
(3) 		4.4
(-1.3) 		1.3
(-3) 		6.1
(-0.3) 		6.3
(-0.2) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177618_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13600
Sequence Type Exemplar sequence
Representative Public ID T27C5.1 NCBI
Target Description T27C5.1 /REP_DB=WormBase Gene ID /WP=CE16495 /TR=O45845 /GB=CAB04862.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074999
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T27C5.13 ENSEMBL cdna:pseudogene chromosome:CEL140:V:17401031:17401973:1 gene:T27C5.13 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_074999 3/11 Cross Hyb Matching Probes None
T27C5.1 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17398139-17401420(+) 100.0 100.0
Public Domain and Genome References
Ensembl T27C5.13
Sequence
Target Sequence 
>C. ELEGANS:177618_AT
gatgggttgccttgtgtattatatttatattgttccatcgagaagcgtctccagagaaac
acgagaaatgcagaaaacatttttgatcagcattttgttgcaaacttcagtgcctttttt
tgtggtcattccagcaattttcaatatcacctgtttcccatttttgtcctgcggtacgcg
ttttagattttataattcagagcctaacccaagttttgaagaaatgcaatcagctataga
ggaatattatgcaacaaattattcaaactgtaatctaacatacaattttcttgcttgttg
gcaattaataggctatacatctcatgttattcaacttgtcgcatttccattacaaattct
cgctttctacgttattctttacaaaacccctattgccatgaagatctctaaaacaccatt
gttaaataatcactctttttgtgttataacggatttcgtcttatgcactctttgtacaat
atatgtatttttcccgatgtatgcaatttccggta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGGGTTGCCTTGTGTATTATATT 613 407 807 Antisense
GTTGCAAACTTCAGTGCCTTTTTTT 448 439 903 Antisense
AGTGCCTTTTTTTGTGGTCATTCCA 232 61 915 Antisense
ATTTTCAATATCACCTGTTTCCCAT 198 15 943 Antisense
TTTGTCCTGCGGTACGCGTTTTAGA 474 667 969 Antisense
TCAGAGCCTAACCCAAGTTTTGAAG 352 603 1003 Antisense
CATACAATTTTCTTGCTTGTTGGCA 467 213 1085 Antisense
AACGGATTTCGTCTTATGCACTCTT 702 143 1254 Antisense
TTCGTCTTATGCACTCTTTGTACAA 696 695 1261 Antisense
ATATATGTATTTTTCCCGATGTATG 593 19 1285 Antisense
TTCCCGATGTATGCAATTTCCGGTA 301 697 1297 Antisense
Sequence Source Affymetrix Proprietary Database