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[177617_at]

Description D1054.5 /REP_DB=WormBase Gene ID /WP=CE05523 /TR=Q18945 /GB=CAA98437.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 27      6grp_high1_10_10 > 62      4grp_highest_8_8 > 42      4grp_high_8_8 > 48      6grp_highest_nonorm > 72      6grp_total > 62      4grp_total > 63      6grp_highest_sub > 03_04      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 273
1 2 3 4 range
A 387.8
(3)
P 		214.7
(-1.4)
P 		308.1
(1)
P 		151.8
(-3)
P 		236
B 425.2
(3)
P 		185.1
(-3)
P 		263.5
(-1)
P 		189.7
(-2.9)
P 		240
C 412.2
(3)
P 		238
(-2.1)
P 		251.1
(-1.7)
P 		206.6
(-3)
P 		206
avr 408.4
(3) 		212.6
(-2.2) 		274.2
(-0.6) 		182.7
(-3) 		226

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 312
1 2 3 4 5 6 range
A 296.7
(-3)
P 		403
(0.8)
P 		462.6
(3)
P 		414.6
(1.3)
P 		384.2
(0.2)
P 		381.3
(0.1)
P 		166
B 226.8
(-3)
P 		369.7
(-0.3)
P 		449
(1.3)
P 		538.8
(3)
P 		360.1
(-0.4)
P 		274.1
(-2.1)
P 		312
C 349.8
(-3)
P 		375.4
(-1.8)
P 		481.1
(3)
P 		434.1
(0.9)
P 		375
(-1.8)
P 		348.7
(-3)
P 		132
avr 291.1
(-3) 		382.7
(0.2) 		464.2
(3) 		462.5
(2.9) 		373.1
(-0.2) 		334.7
(-1.5) 		173
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 141.2
(3)
P 		46.6
(-1.8)
P 		80.5
(-0.1)
P 		22.2
(-3)
P 		119
B 135.6
(3)
P 		45.7
(-2.7)
P 		61.1
(-1.7)
P 		40.4
(-3)
P 		95
C 136.4
(3)
P 		68.4
(-1)
P 		87.5
(0.1)
P 		34.8
(-3)
P 		102
avr 137.7
(3) 		53.6
(-1.8) 		76.4
(-0.5) 		32.5
(-3) 		105

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 54.7
(-3)
P 		143.3
(3)
P 		100.7
(0.1)
P 		105.2
(0.4)
P 		115.9
(1.1)
P 		92.8
(-0.4)
P 		89
B 78.9
(-3)
P 		123.1
(0.9)
P 		109
(-0.3)
P 		142.7
(2.7)
P 		146.3
(3)
P 		102.2
(-0.9)
P 		67
C 129.6
(3)
P 		114.5
(0.9)
P 		122.4
(2)
P 		87.3
(-3)
P 		121.3
(1.8)
P 		116.7
(1.2)
P 		42
avr 87.7
(-3) 		127
(2.9) 		110.7
(0.4) 		111.7
(0.6) 		127.8
(3) 		103.9
(-0.6) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177617_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14177
Sequence Type Exemplar sequence
Representative Public ID D1054.5 NCBI
Target Description D1054.5 /REP_DB=WormBase Gene ID /WP=CE05523 /TR=Q18945 /GB=CAA98437.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073351(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073351 NCBI Caenorhabditis elegans D1054.5 (D1054.5) mRNA, complete cds. 11/11 None
SNAP00000017215 ENSEMBL cdna:SNAP chromosome:CEL140:V:10775439:10776699:-1 11/11 None
GENEFINDER00000017241 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10775439:10776409:-1 11/11 None
D1054.5 ENSEMBL cdna:known chromosome:CEL140:V:10775439:10779164:-1 gene:D1054.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10775438-10779164(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D1054.5
Entrez Gene 183914 Entrez gene
SwissProt Q18945 EMBL-EBI
WormBase CE35446 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98437 Hypothetical protein D1054.5 [Caenorhabditis elegans] ref|NP_505752.2| D1054.5 [Caenorhabditis elegans] 1.0E-178
blast CAA98437 Hypothetical protein D1054.5 [Caenorhabditis elegans] ref|NP_505752.2| D1054.5 [Caenorhabditis elegans] 4.0E-94
blast CAE64889 Hypothetical protein CBG09702 [Caenorhabditis briggsae] 7.0E-94
blast CAA98437 Hypothetical protein D1054.5 [Caenorhabditis elegans] ref|NP_505752.2| D1054.5 [Caenorhabditis elegans] 3.0E-93
blast CAE72999 Hypothetical protein CBG20348 [Caenorhabditis briggsae] 2.0E-53
blast CAE64889 Hypothetical protein CBG09702 [Caenorhabditis briggsae] 2.0E-52
blast CAE72999 Hypothetical protein CBG20348 [Caenorhabditis briggsae] 5.0E-52
Sequence
Target Sequence 
>C. ELEGANS:177617_AT
gctctccgaccacagggaagtcataaatatgacacgatatcgttctcaccgtcatcgaat
caatttccgggttcatctagtgcacaatgcaatgtcgagattcgtttgggcgatgatcgt
acaccacctccaccgccaaatcgtgctccaccagcaccattgagcttcacgcgatgccac
aacacgattgtccatccagaatgctcttttcagctagattacactgaagtgcaaactgtt
tctgttgaagatccggatttgaaagatatgtctcttgaagagatgaggaggcatgcagaa
gacattgaatcctatattcaggatcaagtaaaacaacagtggagccagcagaaaaacgaa
acggagaaatggatcgaacaaatagctggaaaggtcgccaagaccgagacaatgaatacc
atcagattggaaatgacaaataagaaacgtccatcactatcacaagcttttcttccattt
gaatcagatacgagctcacaatccacagatccaacagatccggaaccacataatggttat
gaaaaattatacacctccagagacaaagcagttatcaagcgtcaggggacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCTCCGACCACAGGGAAGTCATA 326 299 634 Antisense
ATGACACGATATCGTTCTCACCGTC 174 45 662 Antisense
CGTTCTCACCGTCATCGAATCAATT 499 247 674 Antisense
ATTTCCGGGTTCATCTAGTGCACAA 346 17 696 Antisense
GTTTGGGCGATGATCGTACACCACC 643 451 737 Antisense
ATGCCACAACACGATTGTCCATCCA 115 41 807 Antisense
GTCCATCCAGAATGCTCTTTTCAGC 391 477 823 Antisense
AAACGTCCATCACTATCACAAGCTT 286 127 1078 Antisense
ATCACAAGCTTTTCTTCCATTTGAA 477 27 1092 Antisense
GATACGAGCTCACAATCCACAGATC 101 425 1120 Antisense
GCAGTTATCAAGCGTCAGGGGACCA 633 311 1201 Antisense
Sequence Source Affymetrix Proprietary Database