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[177616_at]

Description F57G4.4 /REP_DB=WormBase Gene ID /WP=CE18769 /TR=Q9XUX9 /GB=CAB04503.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 59      4grp_total > 17      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 3.3
(-3)
A 		30.6
(0.5)
A 		3.9
(-2.9)
A 		49.7
(3)
P 		46
B 3.4
(-3)
A 		3.7
(-2.9)
A 		28
(1.5)
A 		36.3
(3)
A 		33
C 4
(-3)
A 		11.5
(-2.2)
A 		8.7
(-2.5)
A 		59.8
(3)
A 		56
avr 3.6
(-3) 		15.3
(-1.4) 		13.5
(-1.7) 		48.6
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 41.7
(3)
A 		7.6
(-2.2)
A 		2.2
(-3)
A 		3.7
(-2.8)
A 		8.3
(-2.1)
A 		2.5
(-3)
A 		40
B 3.2
(-2.9)
A 		21
(-0.1)
A 		3.4
(-2.9)
A 		2.5
(-3)
A 		28
(1)
A 		40.5
(3)
A 		38
C 4.7
(-2.9)
A 		4.1
(-3)
A 		20.4
(0.5)
A 		12.4
(-1.2)
A 		4.3
(-3)
A 		31.9
(3)
A 		28
avr 16.5
(0.3) 		10.9
(-1.5) 		8.7
(-2.2) 		6.2
(-3) 		13.5
(-0.7) 		25
(3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1.2
(-2.8)
A 		6.6
(2.3)
A 		1
(-3)
A 		7.3
(3)
P 		6
B 1.1
(-2.8)
A 		0.9
(-3)
A 		6.5
(1.9)
A 		7.7
(3)
A 		7
C 1.3
(-3)
A 		3.3
(-1.6)
A 		3
(-1.8)
A 		10.1
(3)
A 		9
avr 1.2
(-3) 		3.6
(-1) 		3.5
(-1.1) 		8.4
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 7.7
(3)
A 		2.7
(-1.2)
A 		0.5
(-3)
A 		0.9
(-2.7)
A 		2.5
(-1.3)
A 		0.6
(-2.9)
A 		7
B 1.1
(-2.8)
A 		7
(-0.4)
A 		0.8
(-3)
A 		0.7
(-3)
A 		11.4
(1.5)
A 		15.1
(3)
A 		14
C 1.7
(-2.7)
A 		1.2
(-3)
A 		5.2
(-0.5)
A 		2.5
(-2.2)
A 		1.4
(-2.9)
A 		10.7
(3)
A 		10
avr 3.5
(-1.3) 		3.6
(-1.2) 		2.2
(-2.4) 		1.4
(-3) 		5.1
(-0) 		8.8
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177616_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13156
Sequence Type Exemplar sequence
Representative Public ID F57G4.4 NCBI
Target Description F57G4.4 /REP_DB=WormBase Gene ID /WP=CE18769 /TR=Q9XUX9 /GB=CAB04503.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075059(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075059 NCBI Caenorhabditis elegans F57G4.4 (F57G4.4) mRNA, complete cds. 11/11 None
SNAP00000009858 ENSEMBL cdna:SNAP chromosome:CEL140:V:17640558:17641918:-1 11/11 None
F57G4.4 ENSEMBL cdna:known chromosome:CEL140:V:17640558:17642501:-1 gene:F57G4.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000009868 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17640557-17642501(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F57G4.4
Entrez Gene 186459 Entrez gene
SwissProt Q9XUX9 EMBL-EBI
WormBase CE18769 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04503 Hypothetical protein F57G4.4 [Caenorhabditis elegans] ref|NP_507460.1| F57G4.4 [Caenorhabditis elegans] 0.0
blast CAB04503 Hypothetical protein F57G4.4 [Caenorhabditis elegans] ref|NP_507460.1| F57G4.4 [Caenorhabditis elegans] 1.0E-112
blast CAB05695 Hypothetical protein C31C9.3 [Caenorhabditis elegans] ref|NP_496869.1| C31C9.3 [Caenorhabditis elegans] 2.0E-38
blast CAB60575 Hypothetical protein Y37H2A.6 [Caenorhabditis elegans] ref|NP_507538.1| Y37H2A.6 [Caenorhabditis elegans] 1.0E-37
blast CAB05695 Hypothetical protein C31C9.3 [Caenorhabditis elegans] ref|NP_496869.1| C31C9.3 [Caenorhabditis elegans] 7.0E-17
blast CAB07208 Hypothetical protein F47H4.9 [Caenorhabditis elegans] ref|NP_507392.1| F47H4.9 [Caenorhabditis elegans] 2.0E-16
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.1E-35
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 4.3E-8
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.1E-35
Sequence
Target Sequence 
>C. ELEGANS:177616_AT
atctcaatcctcaactcagtgcaattgataaatctctgaaaacgctggagcaattgagtg
tagaaaacttcaatttgtacaacgtctcctgtggctatgctcgttcgattctcccgctgc
tcaaatctggaaaactcaaaacaatccatataagctccaagtgttcctcggcaaattgtt
gccttgatgacattatcgagatggaacagtggaaaggtctcaaatcagcttacttcctcg
gtggctgcaaggtctcggcttcaatcgagaaattcttcaatttggatgacatctttattc
tcgtgaaatcgttgtctgttagtgacacgatcaagattcgtgatgagcttctgccaagtc
caacctttcactttgcaatgtttcgtggcgatatcccaaattcagttgaaattgcgaaag
ttttcaatccagagtattcgggcggtgtggagggcactttcgaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTCAATCCTCAACTCAGTGCAAT 96 31 533 Antisense
CAATTTGTACAACGTCTCCTGTGGC 323 181 603 Antisense
TTCTCCCGCTGCTCAAATCTGGAAA 533 691 641 Antisense
ATATAAGCTCCAAGTGTTCCTCGGC 333 17 680 Antisense
AGGTCTCAAATCAGCTTACTTCCTC 539 57 747 Antisense
TGGATGACATCTTTATTCTCGTGAA 253 551 815 Antisense
GATTCGTGATGAGCTTCTGCCAAGT 270 433 867 Antisense
GTCCAACCTTTCACTTTGCAATGTT 416 477 890 Antisense
GTTTCGTGGCGATATCCCAAATTCA 578 447 912 Antisense
CAATCCAGAGTATTCGGGCGGTGTG 271 181 957 Antisense
GCGGTGTGGAGGGCACTTTCGAATT 264 293 974 Antisense
Sequence Source Affymetrix Proprietary Database