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[177615_s_at]

Description F36H2.2 /REP_DB=WormBase Gene ID /WP=CE28022 /TR=Q93690 /GB=CAB03075.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 48      6grp_high1_10_10 > 74      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 64      6grp_total > 74      4grp_total > 05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 447
1 2 3 4 range
A 680.9
(2.4)
P 		394.1
(-3)
P 		397.2
(-2.9)
P 		711.9
(3)
P 		318
B 513.7
(-2.7)
P 		497.2
(-3)
P 		542.3
(-2.2)
P 		841.1
(3)
P 		344
C 559
(0.2)
P 		427.2
(-3)
P 		491
(-1.5)
P 		678.2
(3)
P 		251
avr 584.5
(-0.1) 		439.5
(-3) 		476.8
(-2.3) 		743.7
(3) 		304

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 584
1 2 3 4 5 6 range
A 467.2
(-3)
P 		686
(-0.8)
P 		1050.7
(3)
P 		946
(1.9)
P 		762.2
(0)
P 		787.1
(0.3)
P 		584
B 594.1
(-3)
P 		646.1
(-2.2)
P 		714.7
(-1.2)
P 		882.5
(1.2)
P 		801.5
(0)
P 		1004.4
(3)
P 		410
C 604
(-3)
P 		719.5
(0.2)
P 		799.7
(2.5)
P 		663.2
(-1.3)
P 		706.6
(-0.1)
P 		817.7
(3)
P 		214
avr 555.1
(-3) 		683.9
(-0.5) 		855
(2.7) 		830.6
(2.3) 		756.8
(0.8) 		869.7
(3) 		315
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 162
1 2 3 4 range
A 247.9
(3)
P 		85.6
(-3)
P 		103.8
(-2.3)
P 		104.2
(-2.3)
P 		162
B 163.8
(1.4)
P 		122.8
(-3)
P 		125.7
(-2.7)
P 		179.2
(3)
P 		56
C 185.1
(3)
P 		122.8
(-2.3)
P 		171.1
(1.8)
P 		114.4
(-3)
P 		71
avr 198.9
(3) 		110.4
(-3) 		133.5
(-1.4) 		132.6
(-1.5) 		89

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 288
1 2 3 4 5 6 range
A 86.1
(-3)
P 		244
(3)
P 		228.8
(2.4)
P 		239.9
(2.8)
P 		230
(2.5)
P 		191.6
(1)
P 		158
B 206.7
(-2)
P 		215.1
(-1.8)
P 		173.5
(-3)
P 		233.7
(-1.2)
P 		325.6
(1.5)
P 		374.5
(3)
P 		201
C 223.9
(0.9)
P 		219.5
(0.7)
P 		203.5
(-0)
P 		133.4
(-3)
P 		228.7
(1.1)
P 		273.7
(3)
P 		140
avr 172.2
(-3) 		226.2
(0) 		201.9
(-1.3) 		202.3
(-1.3) 		261.4
(2) 		279.9
(3) 		108
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177615_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1980
Sequence Type Exemplar sequence
Representative Public ID F36H2.2 NCBI
Target Description F36H2.2 /REP_DB=WormBase Gene ID /WP=CE28022 /TR=Q93690 /GB=CAB03075.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060070(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060070 NCBI Caenorhabditis elegans F36H2.2 (F36H2.2) mRNA, complete cds. 11/11 None
F36H2.2 ENSEMBL cdna:known chromosome:CEL140:I:9254157:9257507:-1 gene:F36H2.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000000826 4/11 Cross Hyb Matching Probes None
GENEFINDER00000000832 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9253720-9257275(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F36H2.2
Entrez Gene 172749 Entrez gene
SwissProt Q93690 EMBL-EBI
WormBase CE36380 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5337 nucleoside transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03075 Hypothetical protein F36H2.2 [Caenorhabditis elegans] ref|NP_492471.2| F36H2.2 [Caenorhabditis elegans] 0.0
blast CAE70375 Hypothetical protein CBG16935 [Caenorhabditis briggsae] 1.0E-171
blast AAW24894 SJCHGC05721 protein [Schistosoma japonicum] 7.0E-37
Protein Domains
Database ID Description E-Value
Pfam IPR002259 EMBL-EBI Delayed-early response protein/equilibrative nucleoside transporter 4.6E-11
Pfam IPR002259 EMBL-EBI Delayed-early response protein/equilibrative nucleoside transporter 1.2E-15
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492471.2 11 5-24,68-90,100-122,129-151,166-185,198-220,282-304,311-330,345-367,379-401,416-438
F36H2.2 11 5-24,68-90,100-122,129-151,166-185,198-220,282-304,311-330,345-367,379-401,416-438
Sequence
Target Sequence 
>C. ELEGANS:177615_S_AT
aaggatagccgtgaactcgctggaagtatcattgcattattcggtgtaactgctgcaatt
tttatatcatttttttcgtgtattcatttctcatgtatttctatctactatacttcgaaa
tctctatgtatatccagttcaactgacgtgtttcttcatttttcccaaattttcaacgag
tattcccatatcttcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGGATAGCCGTGAACTCGCTGGAA 255 159 1174 Antisense
GAACTCGCTGGAAGTATCATTGCAT 355 349 1186 Antisense
GTATCATTGCATTATTCGGTGTAAC 7 453 1199 Antisense
CATTATTCGGTGTAACTGCTGCAAT 707 215 1208 Antisense
ATATCATTTTTTTCGTGTATTCATT 583 19 1237 Antisense
TTCGTGTATTCATTTCTCATGTATT 490 695 1248 Antisense
ATTTCTCATGTATTTCTATCTACTA 245 17 1259 Antisense
TATCTACTATACTTCGAAATCTCTA 467 659 1275 Antisense
ATCTCTATGTATATCCAGTTCAACT 186 33 1293 Antisense
GTTCAACTGACGTGTTTCTTCATTT 552 445 1310 Antisense
TTCAACGAGTATTCCCATATCTTCC 285 685 1345 Antisense
Sequence Source Affymetrix Proprietary Database