[Home] | [Total List]

[177614_at]

Description F36H2.2 /REP_DB=WormBase Gene ID /WP=CE28022 /TR=Q93690 /GB=CAB03075.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 39      6grp_high1_10_10 > 83      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 72      6grp_total > 84      4grp_total > 54      6grp_highest_sub > 04      6grp_cgc > 76      6grp_high1_sub > 04      6grp_cgc_sub > 03_04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 135
1 2 3 4 range
A 304.6
(-1.2)
P 		287.9
(-2.9)
P 		286.9
(-3)
P 		346
(3)
P 		59
B 298.6
(-2.4)
P 		318.9
(0.7)
P 		334.3
(3)
P 		294.5
(-3)
P 		40
C 341.4
(3)
P 		280.5
(0.2)
P 		256.2
(-0.9)
P 		210.6
(-3)
P 		131
avr 314.9
(3) 		295.8
(-0.7) 		292.5
(-1.3) 		283.7
(-3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 306
1 2 3 4 5 6 range
A 248
(-3)
P 		359.3
(-0.8)
P 		420.9
(0.5)
P 		545.5
(3)
P 		428.8
(0.6)
P 		512.5
(2.3)
P 		298
B 319.5
(-3)
P 		413.4
(-0.6)
P 		361.9
(-1.9)
P 		553.5
(3)
P 		515.8
(2)
P 		401.5
(-0.9)
P 		234
C 335.3
(-3)
P 		364.6
(-1.8)
P 		485.7
(3)
P 		404.9
(-0.2)
P 		478.3
(2.7)
P 		386.2
(-1)
P 		150
avr 300.9
(-3) 		379.1
(-0.7) 		422.8
(0.6) 		501.3
(3) 		474.3
(2.2) 		433.4
(1) 		200
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 110.9
(3)
P 		62.5
(-1.8)
P 		75
(-0.6)
P 		50.7
(-3)
P 		60
B 95.2
(3)
P 		78.8
(-0)
P 		77.5
(-0.3)
P 		62.8
(-3)
P 		32
C 113
(3)
P 		80.7
(0.5)
P 		89.3
(1.2)
P 		35.5
(-3)
P 		78
avr 106.4
(3) 		74
(-0.4) 		80.6
(0.3) 		49.7
(-3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 164
1 2 3 4 5 6 range
A 45.7
(-3)
P 		127.8
(2.3)
P 		91.7
(-0)
P 		138.4
(3)
P 		129.4
(2.4)
P 		124.8
(2.1)
P 		93
B 111.2
(-1.9)
P 		137.6
(-0.5)
P 		87.9
(-3)
P 		146.6
(-0.1)
P 		209.6
(3)
P 		149.7
(0)
P 		122
C 124.3
(0.5)
P 		111.3
(-0.6)
P 		123.6
(0.4)
P 		81.4
(-3)
P 		154.8
(3)
P 		129.3
(0.9)
P 		73
avr 93.7
(-3) 		125.6
(-0.3) 		101.1
(-2.4) 		122.1
(-0.6) 		164.6
(3) 		134.6
(0.5) 		71
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177614_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1980
Sequence Type Exemplar sequence
Representative Public ID F36H2.2 NCBI
Target Description F36H2.2 /REP_DB=WormBase Gene ID /WP=CE28022 /TR=Q93690 /GB=CAB03075.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060070
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000000826 ENSEMBL cdna:SNAP chromosome:CEL140:I:9253790:9257344:-1 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001026287 1/11 Cross Hyb Matching Probes None
NM_060070 7/11 Cross Hyb Matching Probes None
GENEFINDER00000000832 6/11 Cross Hyb Matching Probes None
F36H2.1b 3/11 Cross Hyb Matching Probes A 
F36H2.2 7/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9253720-9257275(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03075 Hypothetical protein F36H2.2 [Caenorhabditis elegans] ref|NP_492471.2| F36H2.2 [Caenorhabditis elegans] 0.0
blast CAE70375 Hypothetical protein CBG16935 [Caenorhabditis briggsae] 1.0E-171
blast AAW24894 SJCHGC05721 protein [Schistosoma japonicum] 9.0E-37
Protein Domains
Database ID Description E-Value
Pfam IPR002259 EMBL-EBI Delayed-early response protein/equilibrative nucleoside transporter 4.6E-11
Pfam IPR002259 EMBL-EBI Delayed-early response protein/equilibrative nucleoside transporter 1.2E-15
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000000826 11 5-24,68-90,100-122,129-151,166-185,198-220,282-304,311-330,345-367,379-401,416-438
Sequence
Target Sequence 
>C. ELEGANS:177614_AT
cttggaattcctatttctccgcagtcgcatcgttcctactgtacaatgttggagatctta
ttggaagatccagtgccaattcacttcgactttcaccaaaatacctgctgatcatctcat
ttctgcgattcgcattgattccaatgattgcaatgtgtaatgttgtccacgagcacatac
tcatgcacttattccatatgacggtgtttttgttcttcttatcaattgataaggatagcc
gtgaactcgctggaagtatcattgcattattcggtgtaactgctgcaatttttatatcat
ttttttcgtgtattcatttctcatgtatttctatctactatacttcgaaatctctatgta
tatccagttcaactgacgtgtttcttcatttttcccaaattttcaacgagtattcccata
tcttcccaattcttggtgcctttcggctggcaacgagccacgaagaagccgacgagtatt
cacgacttctaccaatgcctgattctgagatcggaatcgagggatcggacgacgtctatc
tcttacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTGGAATTCCTATTTCTCCGCAGT 620 213 944 Antisense
TCGCATCGTTCCTACTGTACAATGT 686 597 968 Antisense
GATCCAGTGCCAATTCACTTCGACT 39 415 1010 Antisense
CCAAAATACCTGCTGATCATCTCAT 677 275 1039 Antisense
ATCATCTCATTTCTGCGATTCGCAT 461 29 1054 Antisense
GAGCACATACTCATGCACTTATTCC 3 391 1114 Antisense
GACGGTGTTTTTGTTCTTCTTATCA 111 375 1143 Antisense
ATATCTTCCCAATTCTTGGTGCCTT 116 19 1361 Antisense
AGCCGACGAGTATTCACGACTTCTA 305 83 1410 Antisense
ACTTCTACCAATGCCTGATTCTGAG 387 103 1428 Antisense
GATCGGACGACGTCTATCTCTTACC 24 419 1466 Antisense
Sequence Source Affymetrix Proprietary Database