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[177613_at]

Description F57G8.7 /REP_DB=WormBase Gene ID /WP=CE18778 /TR=Q9XU92 /GB=CAB05531.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 12      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 6.7
(-2.9)
A 		16.7
(0.7)
A 		6.5
(-3)
A 		23.2
(3)
A 		17
B 34.9
(3)
A 		11.2
(-3)
A 		12.6
(-2.6)
A 		19
(-1)
A 		24
C 27.6
(-1.8)
A 		8.1
(-3)
A 		7.3
(-3)
A 		112.9
(3)
A 		106
avr 23.1
(-1) 		12
(-2.6) 		8.8
(-3) 		51.7
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 16.6
(-1.5)
A 		8
(-2.7)
A 		9.7
(-2.4)
A 		47.5
(2.6)
A 		50.7
(3)
A 		5.5
(-3)
A 		45
B 9.1
(-2.5)
A 		5.3
(-2.9)
A 		13.8
(-2)
A 		22.7
(-1)
A 		58.2
(3)
A 		4.7
(-3)
A 		54
C 44.4
(3)
A 		14.2
(-1.7)
A 		42
(2.6)
A 		44.7
(3)
A 		29.7
(0.7)
A 		5.9
(-3)
A 		39
avr 23.4
(-0.4) 		9.2
(-2.4) 		21.8
(-0.6) 		38.3
(1.8) 		46.2
(3) 		5.4
(-3) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 2.4
(-0.8)
A 		3.6
(3)
A 		1.7
(-3)
A 		3.4
(2.4)
A 		2
B 11.1
(3)
A 		2.8
(-3)
A 		2.9
(-2.9)
A 		4
(-2.1)
A 		8
C 9.1
(-0.6)
A 		2.3
(-3)
A 		2.5
(-2.9)
A 		19
(3)
A 		17
avr 7.5
(1.8) 		2.9
(-2.5) 		2.4
(-3) 		8.8
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 3.1
(-2.2)
A 		2.8
(-2.4)
A 		2.1
(-2.7)
A 		12.1
(1.6)
A 		15.3
(3)
A 		1.3
(-3)
A 		14
B 3.2
(-2.6)
A 		1.8
(-3)
A 		3.3
(-2.6)
A 		6
(-1.8)
A 		23.6
(3)
A 		1.8
(-3)
A 		22
C 16.5
(3)
A 		4.3
(-2)
A 		10.7
(0.6)
A 		9
(-0.1)
A 		9.6
(0.1)
A 		2
(-3)
A 		15
avr 7.6
(-0.6) 		3
(-2.5) 		5.4
(-1.5) 		9
(0) 		16.2
(3) 		1.7
(-3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177613_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12608
Sequence Type Exemplar sequence
Representative Public ID F57G8.7 NCBI
Target Description F57G8.7 /REP_DB=WormBase Gene ID /WP=CE18778 /TR=Q9XU92 /GB=CAB05531.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074726(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074726 NCBI Caenorhabditis elegans F57G8.7 (F57G8.7) mRNA, complete cds. 11/11 None
SNAP00000042078 ENSEMBL cdna:SNAP chromosome:CEL140:V:16331953:16336256:1 11/11 None
GENEFINDER00000042087 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16331953:16332807:1 11/11 None
F57G8.7 ENSEMBL cdna:known chromosome:CEL140:V:16331953:16332890:1 gene:F57G8.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16331952-16332890(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F57G8.7
Entrez Gene 186468 Entrez gene
SwissProt Q9XU92 EMBL-EBI
WormBase CE18778 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05531 Hypothetical protein F57G8.7 [Caenorhabditis elegans] ref|NP_507127.1| F57G8.7 [Caenorhabditis elegans] 7.0E-74
blast CAB05531 Hypothetical protein F57G8.7 [Caenorhabditis elegans] ref|NP_507127.1| F57G8.7 [Caenorhabditis elegans] 1.0E-69
blast CAB05531 Hypothetical protein F57G8.7 [Caenorhabditis elegans] ref|NP_507127.1| F57G8.7 [Caenorhabditis elegans] 1.0E-68
blast CAE73433 Hypothetical protein CBG20876 [Caenorhabditis briggsae] 2.0E-9
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507127.1 1 5-27
F57G8.7 1 5-27
SNAP00000042078 1 5-27
GENEFINDER00000042087 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:177613_AT
aagactattatccttttccttgcacttacttcctttgcttacgccggttcacttggattg
gccattccagctggagcaaaagatgtacatctgccaatcaccatcggggatatcaaggca
attactcgtaaactgaagaatggatcggttgagacatggaacgtcgtggggccaaataag
ggaacatgggttgactcgaaaggaaagaaaatcgattcatccaattactcttacaaggcc
ggaacaattgtcatcaagaaagtttccaaaaacgatgaagggttctacgactatgagcca
ctgaccacttttgctccagagaagcttccaccaggtgttcatgttgatcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGACTATTATCCTTTTCCTTGCAC 370 153 16 Antisense
TTACGCCGGTTCACTTGGATTGGCC 685 429 54 Antisense
TTGGATTGGCCATTCCAGCTGGAGC 392 703 68 Antisense
AAGATGTACATCTGCCAATCACCAT 217 155 95 Antisense
CTGCCAATCACCATCGGGGATATCA 195 237 106 Antisense
GAGACATGGAACGTCGTGGGGCCAA 271 385 166 Antisense
ATCGATTCATCCAATTACTCTTACA 561 35 226 Antisense
GAAGGGTTCTACGACTATGAGCCAC 379 335 292 Antisense
TATGAGCCACTGACCACTTTTGCTC 580 655 307 Antisense
TTTGCTCCAGAGAAGCTTCCACCAG 710 667 325 Antisense
TTCCACCAGGTGTTCATGTTGATCC 422 699 341 Antisense
Sequence Source Affymetrix Proprietary Database