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[177612_s_at]

Description F17B5.1 /REP_DB=WormBase Gene ID /WP=CE15865 /TR=O45373 /GB=CAB02969.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 37      6grp_high1_10_10 > 62      4grp_high_8_8 > 55      6grp_highest_nonorm > 62      6grp_total > 62      4grp_total > 56      6grp_highest_sub > 03_04      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 392
1 2 3 4 range
A 88.5
(-3)
P 		371.4
(1.7)
P 		446.9
(3)
P 		124.3
(-2.4)
A 		358
B 133.2
(-3)
P 		343.5
(0.7)
P 		477.5
(3)
P 		132.2
(-3)
M 		345
C 85.9
(-3)
P 		329.3
(1.1)
P 		441
(3)
P 		102
(-2.7)
P 		355
avr 102.5
(-3) 		348.1
(1.2) 		455.1
(3) 		119.5
(-2.7) 		353

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 957
1 2 3 4 5 6 range
A 155
(-3)
P 		429.5
(-0.3)
P 		774.7
(3)
P 		602.5
(1.3)
P 		591.8
(1.2)
P 		330.9
(-1.3)
P 		620
B 203.9
(-3)
P 		376.5
(-1.9)
P 		1112.2
(3)
P 		620.9
(-0.2)
P 		470
(-1.2)
P 		419.4
(-1.6)
P 		908
C 179.6
(-3)
P 		479.2
(-0.3)
P 		792.9
(2.5)
P 		845
(3)
P 		382.7
(-1.2)
P 		395.3
(-1.1)
P 		665
avr 179.5
(-3) 		428.4
(-0.9) 		893.3
(3) 		689.5
(1.3) 		481.5
(-0.5) 		381.9
(-1.3) 		714
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 137
1 2 3 4 range
A 32.2
(-2.1)
P 		80.6
(0.8)
P 		116.8
(3)
P 		18.2
(-3)
A 		99
B 42.5
(-2)
P 		84.8
(1.1)
P 		110.7
(3)
P 		28.2
(-3)
M 		83
C 28.4
(-2.5)
P 		94.7
(0.4)
P 		153.7
(3)
P 		17.2
(-3)
P 		137
avr 34.4
(-2.3) 		86.7
(0.7) 		127.1
(3) 		21.2
(-3) 		106

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 242
1 2 3 4 5 6 range
A 28.6
(-3)
P 		152.8
(2)
P 		168.7
(2.6)
P 		152.8
(2)
P 		178.6
(3)
P 		80.6
(-0.9)
P 		150
B 70.9
(-3)
P 		125.3
(-1.4)
P 		270.1
(3)
P 		164.4
(-0.2)
P 		190.9
(0.6)
P 		156.4
(-0.4)
P 		199
C 66.6
(-3)
P 		146.2
(0.5)
P 		201.8
(3)
P 		169.9
(1.6)
P 		123.8
(-0.5)
P 		132.3
(-0.1)
P 		135
avr 55.4
(-3) 		141.4
(0.3) 		213.5
(3) 		162.4
(1.1) 		164.4
(1.1) 		123.1
(-0.4) 		158
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177612_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1989
Sequence Type Exemplar sequence
Representative Public ID F17B5.1 NCBI
Target Description F17B5.1 /REP_DB=WormBase Gene ID /WP=CE15865 /TR=O45373 /GB=CAB02969.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060907(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060907 NCBI Caenorhabditis elegans F17B5.1 (F17B5.1) mRNA, complete cds. 11/11 None
SNAP00000002451 ENSEMBL cdna:SNAP chromosome:CEL140:I:13193049:13196136:1 11/11 None
GENEFINDER00000002463 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13193049:13196136:1 11/11 None
F17B5.1 ENSEMBL cdna:known chromosome:CEL140:I:13193031:13196308:1 gene:F17B5.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13192979-13196067(+) 86.89 100.0
Public Domain and Genome References
Gene Title
Ensembl F17B5.1
Entrez Gene 173182 Entrez gene
SwissProt O45373 EMBL-EBI
WormBase CE15865 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02969 Hypothetical protein F17B5.1 [Caenorhabditis elegans] ref|NP_493308.1| F17B5.1 [Caenorhabditis elegans] 0.0
blast CAB02969 Hypothetical protein F17B5.1 [Caenorhabditis elegans] ref|NP_493308.1| F17B5.1 [Caenorhabditis elegans] 1.0E-123
blast CAB04699 Hypothetical protein T05F1.11 [Caenorhabditis elegans] ref|NP_492564.2| T05F1.11 [Caenorhabditis elegans] 2.0E-81
blast CAB04699 Hypothetical protein T05F1.11 [Caenorhabditis elegans] ref|NP_492564.2| T05F1.11 [Caenorhabditis elegans] 4.0E-71
blast AAU20849 Hypothetical protein C32D5.8b [Caenorhabditis elegans] ref|NP_001022004.1| C32D5.8b [Caenorhabditis elegans] 2.0E-28
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000002451 1 200-217
Sequence
Target Sequence 
>C. ELEGANS:177612_S_AT
aatgcacattcctccaaaatttcacatttatcaggcaccaacatccatctcaaacatata
acgagcgagtgctcgatggaaaagtggttggactgtatttctctgctcattggtgtccgc
catctcgcgatttcactccggttcttgcacaattctatagtcaagtagaggataacttcg
aaatactattcgtttcgagcgacaataatacacaagaaatgaacttctacttgcaaaatt
tccatggcgattggttccatttgccactcaatttgtgcaattcaatgaagcaccgaaata
ccaaaaatcatattcctgccttaataataatgaaacccgatggaacagttattactgatg
atggacgaaatctagtttctcaatggatcaacga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGCACATTCCTCCAAAATTTCAC 453 165 1910 Antisense
ATTTCACATTTATCAGGCACCAACA 55 17 1928 Antisense
CACCAACATCCATCTCAAACATATA 369 203 1945 Antisense
AGTGGTTGGACTGTATTTCTCTGCT 365 59 1992 Antisense
ACTGTATTTCTCTGCTCATTGGTGT 430 97 2001 Antisense
CTCCGGTTCTTGCACAATTCTATAG 515 233 2045 Antisense
ATACTATTCGTTTCGAGCGACAATA 640 23 2092 Antisense
TCTACTTGCAAAATTTCCATGGCGA 516 613 2135 Antisense
ATTTGCCACTCAATTTGTGCAATTC 520 17 2168 Antisense
TACCAAAAATCATATTCCTGCCTTA 27 651 2208 Antisense
ATCTAGTTTCTCAATGGATCAACGA 135 33 2279 Antisense
Sequence Source Affymetrix Proprietary Database