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[177610_at]

Description T24D5.3 /REP_DB=WormBase Gene ID /WP=CE03723 /TR=Q22733 /GB=CAA92017.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 91      4grp_total > 19      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 33.9
(0.1)
A 		47.6
(3)
M 		18.9
(-3)
A 		42.5
(1.9)
A 		29
B 9.2
(-2)
A 		9.2
(-2)
A 		5
(-3)
A 		29.8
(3)
A 		25
C 2.6
(-3)
A 		8.5
(-2.5)
A 		5.7
(-2.8)
A 		78.3
(3)
P 		76
avr 15.2
(-2.2) 		21.8
(-1.2) 		9.9
(-3) 		50.2
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 36.5
(3)
A 		8.6
(-2)
A 		3
(-3)
A 		29.5
(1.7)
A 		15.1
(-0.8)
A 		3.4
(-2.9)
A 		34
B 6.2
(-3)
A 		39.7
(3)
A 		11.1
(-2.1)
A 		33.5
(1.9)
A 		29.9
(1.2)
A 		14.6
(-1.5)
A 		34
C 11.4
(-2.4)
A 		8.4
(-3)
A 		40.9
(3)
A 		21.3
(-0.6)
A 		34.5
(1.8)
A 		35.7
(2)
A 		33
avr 18
(-2.9) 		18.9
(-2.4) 		18.3
(-2.8) 		28.1
(3) 		26.5
(2.1) 		17.9
(-3) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 12.3
(3)
A 		10.3
(1.4)
M 		4.9
(-3)
A 		6.2
(-1.9)
A 		7
B 2.9
(-1)
A 		2.3
(-1.7)
A 		1.2
(-3)
A 		6.3
(3)
A 		5
C 0.9
(-3)
A 		2.5
(-2.2)
A 		2
(-2.5)
A 		13.2
(3)
P 		12
avr 5.4
(-0.3) 		5
(-0.7) 		2.7
(-3) 		8.6
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 6.7
(2.3)
A 		3.1
(-0.9)
A 		0.7
(-3)
A 		7.5
(3)
A 		4.6
(0.4)
A 		0.8
(-2.9)
A 		7
B 2.1
(-3)
A 		13.2
(3)
A 		2.7
(-2.7)
A 		8.9
(0.7)
A 		12.2
(2.5)
A 		5.5
(-1.2)
A 		11
C 4.2
(-2)
A 		2.6
(-3)
A 		10.4
(2)
A 		4.3
(-1.9)
A 		11.2
(2.5)
A 		12
(3)
A 		9
avr 4.3
(-3) 		6.3
(-0.6) 		4.6
(-2.6) 		6.9
(0.1) 		9.3
(3) 		6.1
(-0.8) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177610_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17515
Sequence Type Exemplar sequence
Representative Public ID T24D5.3 NCBI
Target Description T24D5.3 /REP_DB=WormBase Gene ID /WP=CE03723 /TR=Q22733 /GB=CAA92017.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077702(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077702 NCBI Caenorhabditis elegans T24D5.3 (T24D5.3) mRNA, complete cds. 11/11 None
GENEFINDER00000013149 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12579402:12583133:1 11/11 None
SNAP00000013138 ENSEMBL cdna:SNAP chromosome:CEL140:X:12579864:12583133:1 11/11 None
T24D5.3 ENSEMBL cdna:known chromosome:CEL140:X:12579994:12583133:1 gene:T24D5.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12580600-12583133(+) 98.77 98.77
Public Domain and Genome References
Gene Title
Ensembl T24D5.3
Entrez Gene 188851 Entrez gene
SwissProt Q22733 EMBL-EBI
WormBase CE03723 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92017 Hypothetical protein T24D5.3 [Caenorhabditis elegans] ref|NP_510103.1| T24D5.3 [Caenorhabditis elegans] 1.0E-121
blast CAA92017 Hypothetical protein T24D5.3 [Caenorhabditis elegans] ref|NP_510103.1| T24D5.3 [Caenorhabditis elegans] 1.0E-114
blast CAA92017 Hypothetical protein T24D5.3 [Caenorhabditis elegans] ref|NP_510103.1| T24D5.3 [Caenorhabditis elegans] 2.0E-90
Sequence
Target Sequence 
>C. ELEGANS:177610_AT
cgtcaaccaacgtgatgtctttttggaaactggaaacagttacaattcgttcaaatcgtc
agtccagaagcaaaagaacccggtctccaaggtgatactccaaccagacatcagtcaact
cagtgattcttcagatgcggaggacagctgtaaatatggaatcgaaatctgggaaaacga
ggaaaactgccaattgccagtcaaacaaacacttcctgaacagccggaagagtttcacat
tggccgtatcaaagccaatctgaaatttctcatgcaacaattgaaatatctctcaggttg
tgaaaatggggaacaacacgctaacgaaattttcaaaagcctgcccgcccaagtgtggga
ccgagcatctctcaagcgagcagaaattgctgaggatcttttgatcgctgaagaatttat
cgaggctcggcgtggtcagcttgagcaggatgataaactcaaagtttatttatacaatgt
tttggaaaataaactgaagaaggaaaataatccagtccttctcactattgttcttcattt
ggagaataaatttcggcagttgaatgccgcggattttgccgctct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGTCAACCAACGTGATGTCTTTTTG 27 245 204 Antisense
CAATTCGTTCAAATCGTCAGTCCAG 18 181 246 Antisense
GAACCCGGTCTCCAAGGTGATACTC 605 345 279 Antisense
GATACTCCAACCAGACATCAGTCAA 140 425 297 Antisense
GTCAACTCAGTGATTCTTCAGATGC 55 465 317 Antisense
GGAAGAGTTTCACATTGGCCGTATC 511 527 429 Antisense
CCAAGTGTGGGACCGAGCATCTCTC 108 277 552 Antisense
CCGAGCATCTCTCAAGCGAGCAGAA 667 263 564 Antisense
CTCGGCGTGGTCAGCTTGAGCAGGA 61 233 629 Antisense
TCCTTCTCACTATTGTTCTTCATTT 650 591 719 Antisense
TGAATGCCGCGGATTTTGCCGCTCT 571 573 764 Antisense
Sequence Source Affymetrix Proprietary Database