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[177609_at] peroxisome biosynthesis protein like

Description C11H1.4 /REP_DB=WormBase Gene ID /WP=CE05263 /TR=Q17916 /GB=CAA94120.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 66      6grp_high1_10_10 > 76      4grp_highest_8_8 > 07      4grp_high_8_8 > 21      6grp_highest_nonorm > 90      6grp_total > 66      4grp_total > 19      6grp_highest_sub > Da      6grp_cgc > 57      6grp_high1_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 158
1 2 3 4 range
A 141.9
(-1.1)
P 		134.9
(-2)
P 		126.9
(-3)
P 		174.3
(3)
P 		47
B 81.3
(-3)
P 		109.3
(-1.9)
P 		82.2
(-3)
P 		234.4
(3)
P 		153
C 98.7
(-1)
P 		126.3
(1.5)
P 		76.2
(-3)
P 		143.5
(3)
P 		67
avr 107.3
(-2.2) 		123.5
(-1.1) 		95.1
(-3) 		184.1
(3) 		89

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 120
1 2 3 4 5 6 range
A 90.5
(-3)
P 		134.8
(0.1)
P 		99.1
(-2.4)
P 		133.3
(-0)
P 		120.3
(-0.9)
P 		176.7
(3)
P 		86
B 74.8
(-3)
P 		116.7
(0.6)
P 		93.1
(-1.4)
P 		98
(-1)
P 		113.4
(0.3)
P 		145.2
(3)
P 		70
C 86.9
(-2)
P 		138.6
(0.5)
P 		143.8
(0.8)
P 		136.4
(0.4)
P 		67.7
(-3)
P 		187.6
(3)
P 		120
avr 84.1
(-3) 		130
(0.2) 		112
(-1) 		122.6
(-0.3) 		100.5
(-1.9) 		169.8
(3) 		86
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 51.7
(3)
P 		29.3
(-2.1)
P 		33.2
(-1.2)
P 		25.5
(-3)
P 		26
B 25.9
(-1.7)
P 		27
(-1.4)
P 		19
(-3)
P 		49.9
(3)
P 		31
C 32.7
(1.2)
P 		36.3
(3)
P 		26.6
(-1.8)
P 		24.2
(-3)
P 		12
avr 36.8
(3) 		30.9
(-0.4) 		26.3
(-3) 		33.2
(0.9) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 16.7
(-3)
P 		47.9
(3)
P 		21.6
(-2.1)
P 		33.8
(0.3)
P 		36.3
(0.8)
P 		43
(2.1)
P 		31
B 26
(-2.4)
P 		38.9
(0.1)
P 		22.6
(-3)
P 		26
(-2.4)
P 		46.1
(1.5)
P 		54.1
(3)
P 		32
C 32.2
(-1.5)
P 		42.3
(-0)
P 		36.6
(-0.8)
P 		27.4
(-2.2)
P 		21.9
(-3)
P 		62.8
(3)
P 		41
avr 25
(-3) 		43
(0.8) 		26.9
(-2.6) 		29.1
(-2.1) 		34.8
(-0.9) 		53.3
(3) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177609_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17953
Sequence Type Exemplar sequence
Representative Public ID C11H1.4 NCBI
Target Description C11H1.4 /REP_DB=WormBase Gene ID /WP=CE05263 /TR=Q17916 /GB=CAA94120.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077985(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077985 NCBI Caenorhabditis elegans PeRoXisome assembly factor family member (prx-1) (prx-1) mRNA, complete cds. 11/11 A 
GENEFINDER00000018170 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14313861:14318022:1 9/11 None
C11H1.4 ENSEMBL cdna:known chromosome:CEL140:X:14313640:14326621:1 gene:C11H1.4 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000018162 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14313860-14318088(+) 98.62 100.0
Public Domain and Genome References
Gene Title peroxisome biosynthesis protein like
Gene Symbol prx-1
Ensembl C11H1.4
Entrez Gene 181538 Entrez gene
SwissProt Q17916 EMBL-EBI
WormBase CE30339 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
166 nucleotide binding inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94120 Hypothetical protein C11H1.4 [Caenorhabditis elegans] ref|NP_510386.2| PeRoXisome assembly factor family member (prx-1) [Caenorhabditis elegans] dbj|BAB62002.1| peroxin [Caenorhabditis elegans] 0.0
blast CAE63007 Hypothetical protein CBG07246 [Caenorhabditis briggsae] 0.0
blast CAE63005 Hypothetical protein CBG07244 [Caenorhabditis briggsae] 1.0E-173
Protein Domains
Database ID Description E-Value
Pfam IPR003959 EMBL-EBI AAA ATPase, central region 3.0E-14
Pfam IPR003959 EMBL-EBI AAA ATPase, central region 3.2E-74
Sequence
Target Sequence 
>C. ELEGANS:177609_AT
ggaagccactcaaaactgctgtcagagttggataaagtttgttgtggaggaaaacaacac
gtgatggttcttggaggaaatgttttgttcgaaagaaaacatgttttatttaattttaaa
aaatttttttccaggttccggaaaaacaacattcataaaaaagttggctcgtcggctctc
ccacaattcatcagaaggtcagctgatataattgaaaagctgctttcggacactctacac
gaaatggaagtcaaaaaaccatcatgcttattcttagacgatttcgatgtgattcttcca
caaatcgatcaagaacagagacatttggcaatggagaaagtagtatcagtattcgcccag
aaattacgtacaacagaagtcagcgtggtcctcgttgctcagaggctatcgagcctcaat
gacgggtttgtggagcaagttatgcgagcaaggcctattgtttccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAAGCCACTCAAAACTGCTGTCAG 223 531 1402 Antisense
AACAACACGTGATGGTTCTTGGAGG 582 133 1454 Antisense
TAAAAAAGTTGGCTCGTCGGCTCTC 53 639 1557 Antisense
GCTCTCCCACAATTCATCAGAAGGT 643 299 1576 Antisense
GAAAAGCTGCTTTCGGACACTCTAC 105 355 1615 Antisense
AAACCATCATGCTTATTCTTAGACG 430 125 1657 Antisense
AAGTAGTATCAGTATTCGCCCAGAA 584 157 1739 Antisense
AACAGAAGTCAGCGTGGTCCTCGTT 58 133 1773 Antisense
GGTCCTCGTTGCTCAGAGGCTATCG 503 501 1788 Antisense
GGCTATCGAGCCTCAATGACGGGTT 212 537 1805 Antisense
ATGCGAGCAAGGCCTATTGTTTCCC 548 41 1843 Antisense
Sequence Source Affymetrix Proprietary Database