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[177608_at]

Description C53D6.6 /REP_DB=WormBase Gene ID /WP=CE05491 /TR=Q18809 /GB=CAA94225.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 15      6grp_high1_10_10 > 40      4grp_highest_8_8 > 21      4grp_high_8_8 > 15      6grp_highest_nonorm > 80      6grp_total > 52      4grp_total > 08      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 172
1 2 3 4 range
A 158
(-2)
P 		142.7
(-3)
P 		188.3
(-0.2)
P 		238.9
(3)
P 		96
B 141.7
(-3)
P 		157.3
(-2.4)
P 		170.3
(-2)
P 		311.8
(3)
P 		170
C 139.7
(-3)
P 		153.5
(-2.2)
P 		201.5
(0.5)
P 		247
(3)
P 		107
avr 146.5
(-3) 		151.2
(-2.8) 		186.7
(-1) 		265.9
(3) 		119

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 219
1 2 3 4 5 6 range
A 195.5
(-0.8)
P 		232.4
(0.6)
P 		295.2
(3)
P 		242.7
(1)
P 		150.2
(-2.6)
P 		138.7
(-3)
P 		157
B 258.8
(-0.1)
P 		191.8
(-2.2)
P 		357.6
(3)
P 		237.7
(-0.8)
P 		181.6
(-2.5)
P 		166.2
(-3)
P 		191
C 163
(-2.9)
P 		212.6
(0.2)
P 		256.8
(3)
P 		235.2
(1.6)
P 		175.8
(-2.1)
P 		161.4
(-3)
P 		95
avr 205.8
(-1) 		212.3
(-0.7) 		303.2
(3) 		238.5
(0.4) 		169.2
(-2.4) 		155.4
(-3) 		148
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 57.5
(3)
P 		31
(-3)
P 		49.2
(1.1)
P 		35
(-2.1)
P 		27
B 45.2
(-1.6)
P 		38.8
(-3)
P 		39.5
(-2.8)
P 		66.4
(3)
P 		28
C 46.3
(-2)
P 		44.1
(-2.5)
P 		70.2
(3)
P 		41.6
(-3)
P 		29
avr 49.7
(1.7) 		38
(-3) 		53
(3) 		47.7
(0.9) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 36
(-2.7)
P 		82.6
(3)
P 		64.3
(0.8)
P 		61.5
(0.4)
P 		45.3
(-1.6)
P 		33.8
(-3)
P 		49
B 90
(3)
P 		63.8
(-2.6)
P 		86.8
(2.3)
P 		63
(-2.8)
P 		73.8
(-0.5)
P 		62
(-3)
P 		28
C 60.4
(1.3)
P 		64.9
(2.8)
P 		65.4
(3)
P 		47.3
(-3)
P 		56.9
(0.2)
P 		54
(-0.8)
P 		18
avr 62.1
(0.3) 		70.4
(2.5) 		72.2
(3) 		57.3
(-1) 		58.7
(-0.6) 		49.9
(-3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177608_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10100
Sequence Type Exemplar sequence
Representative Public ID C53D6.6 NCBI
Target Description C53D6.6 /REP_DB=WormBase Gene ID /WP=CE05491 /TR=Q18809 /GB=CAA94225.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069169(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069169 NCBI Caenorhabditis elegans C53D6.6 (C53D6.6) mRNA, complete cds. 11/11 None
SNAP00000020668 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9027781:9031626:-1 11/11 None
GENEFINDER00000020676 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9027781:9031626:-1 11/11 None
C53D6.6 ENSEMBL cdna:known chromosome:CEL140:IV:9027671:9032631:-1 gene:C53D6.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9027786-9031632(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C53D6.6
Entrez Gene 177720 Entrez gene
SwissProt Q18809 EMBL-EBI
WormBase CE05491 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1635759_AT dm
DROSGENOME1:145933_AT dm
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
46983 protein dimerization activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94225 Hypothetical protein C53D6.6 [Caenorhabditis elegans] ref|NP_501570.1| C53D6.6 [Caenorhabditis elegans] 0.0
blast CAA90614 Hypothetical protein K09A11.1 [Caenorhabditis elegans] ref|NP_510202.2| K09A11.1 [Caenorhabditis elegans] 8.0E-27
blast AAC46515 Hypothetical protein C10A4.1 [Caenorhabditis elegans] ref|NP_509255.1| C10A4.1 [Caenorhabditis elegans] 2.0E-23
Protein Domains
Database ID Description E-Value
Pfam IPR008906 EMBL-EBI HAT dimerisation 1.9E-19
Sequence
Target Sequence 
>C. ELEGANS:177608_AT
tactcggcagaacactcatatgatatgtgcaaggctatcaaattgacacttgaagaagaa
ttgaaaagatatctccaaattccgacacttttgtttgcaactgttatcgatccaagagta
aagttattattactgcctgcgacagcaaaggaaattgtgcagaagaaacttgaaaaaatt
gcacaaaatataaggaatgcagaagacgtaaaagatgttgcaattactcacaaccagcat
tgtaaaactgatgttcaaagcaattatgatctattcgcagagttgttcaaaaaattacac
ggagaaaattatcagaattcttgtaaagagggagagatcgtgagcccacaagcaatggct
aagacagagctagaacgatggatttcggagccaaacattgcatttgaggagcctatagtg
ttttggcaaaaagcagaaaatcgaactagatatcctcttttattccaactctcttcaatt
gtattatgcctaccgggtgctttgttgaatactgaaaatcttacttccgctaagaatcta
cttttcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACTCGGCAGAACACTCATATGATA 20 647 1231 Antisense
AGATATCTCCAAATTCCGACACTTT 114 67 1297 Antisense
ATTCCGACACTTTTGTTTGCAACTG 429 7 1309 Antisense
GTTATTATTACTGCCTGCGACAGCA 459 447 1353 Antisense
GAGAGATCGTGAGCCCACAAGCAAT 530 395 1562 Antisense
GATGGATTTCGGAGCCAAACATTGC 700 405 1607 Antisense
AGATATCCTCTTTTATTCCAACTCT 667 65 1678 Antisense
AACTCTCTTCAATTGTATTATGCCT 363 141 1697 Antisense
TGCCTACCGGGTGCTTTGTTGAATA 265 583 1717 Antisense
AATACTGAAAATCTTACTTCCGCTA 305 173 1738 Antisense
ACTTCCGCTAAGAATCTACTTTTCG 667 103 1753 Antisense
Sequence Source Affymetrix Proprietary Database