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[177607_s_at]

Description F22B5.5 /REP_DB=WormBase Gene ID /WP=CE02200 /TR=Q19709 /GB=CAA90357.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 77      4grp_high_8_8 > 21      6grp_total > 78      4grp_total > 19      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 58.2
(-2.9)
M 		80.6
(-1.3)
P 		57.4
(-3)
P 		139.7
(3)
P 		82
B 78.8
(2.6)
P 		76.3
(2.1)
P 		49
(-3)
A 		81.1
(3)
P 		32
C 59
(-2.8)
P 		77.9
(-1.7)
P 		55.7
(-3)
M 		155.2
(3)
P 		100
avr 65.3
(-2) 		78.3
(-1) 		54
(-3) 		125.3
(3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 518
1 2 3 4 5 6 range
A 39.9
(-3)
A 		52.2
(-2.9)
A 		88.1
(-2.4)
P 		74.9
(-2.6)
M 		231.2
(-0.7)
P 		541.8
(3)
P 		502
B 23.5
(-3)
M 		57.8
(-2.6)
P 		45.4
(-2.7)
A 		55.1
(-2.6)
P 		236
(-0.4)
P 		510.9
(3)
P 		487
C 63.2
(-2.9)
P 		54.6
(-3)
P 		53.3
(-3)
A 		66.4
(-2.8)
P 		176.8
(-1.2)
P 		458.5
(3)
P 		405
avr 42.2
(-3) 		54.9
(-2.8) 		62.3
(-2.7) 		65.5
(-2.7) 		214.7
(-0.8) 		503.7
(3) 		462
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 21.2
(3)
M 		17.5
(-0.6)
P 		15
(-3)
P 		20.4
(2.2)
P 		6
B 25.1
(3)
P 		18.8
(0.2)
P 		11.4
(-3)
A 		17.3
(-0.4)
P 		14
C 19.5
(-2.9)
P 		22.4
(-0.4)
P 		19.4
(-3)
M 		26.2
(3)
P 		7
avr 21.9
(3) 		19.6
(0.9) 		15.3
(-3) 		21.3
(2.5) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 183
1 2 3 4 5 6 range
A 7.3
(-3)
A 		18.6
(-2.5)
A 		19.2
(-2.4)
P 		19
(-2.4)
M 		69.8
(0)
P 		131.9
(3)
P 		125
B 8.2
(-3)
M 		19.2
(-2.6)
P 		11
(-2.9)
A 		14.6
(-2.8)
P 		95.9
(-0.1)
P 		190.5
(3)
P 		182
C 23.4
(-2.6)
P 		16.6
(-2.9)
P 		13.6
(-3)
A 		13.4
(-3)
P 		57.2
(-1.1)
P 		153.5
(3)
P 		140
avr 13
(-3) 		18.1
(-2.8) 		14.6
(-2.9) 		15.7
(-2.9) 		74.3
(-0.5) 		158.6
(3) 		146
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177607_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3329
Sequence Type Exemplar sequence
Representative Public ID F22B5.5 NCBI
Target Description F22B5.5 /REP_DB=WormBase Gene ID /WP=CE02200 /TR=Q19709 /GB=CAA90357.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063381(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063381 NCBI Caenorhabditis elegans F22B5.5 (F22B5.5) mRNA, complete cds. 11/11 None
SNAP00000010405 ENSEMBL cdna:SNAP chromosome:CEL140:II:8453208:8454513:-1 11/11 None
GENEFINDER00000010409 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8453208:8456065:-1 11/11 None
F22B5.5 ENSEMBL cdna:known chromosome:CEL140:II:8453208:8454535:-1 gene:F22B5.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8453204-8454510(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F22B5.5
Entrez Gene 174349 Entrez gene
SwissProt Q19709 EMBL-EBI
WormBase CE35861 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90357 Hypothetical protein F22B5.5 [Caenorhabditis elegans] ref|NP_495782.2| F22B5.5 [Caenorhabditis elegans] 0.0
blast CAA90357 Hypothetical protein F22B5.5 [Caenorhabditis elegans] ref|NP_495782.2| F22B5.5 [Caenorhabditis elegans] 1.0E-180
blast CAA90357 Hypothetical protein F22B5.5 [Caenorhabditis elegans] ref|NP_495782.2| F22B5.5 [Caenorhabditis elegans] 1.0E-156
blast CAE57634 Hypothetical protein CBG00619 [Caenorhabditis briggsae] 1.0E-120
blast CAE57634 Hypothetical protein CBG00619 [Caenorhabditis briggsae] 1.0E-115
blast CAE57634 Hypothetical protein CBG00619 [Caenorhabditis briggsae] 1.0E-101
blast CAA90358 Hypothetical protein F22B5.6 [Caenorhabditis elegans] ref|NP_495783.1| F22B5.6 [Caenorhabditis elegans] 1.0E-78
blast AAC71165 Hypothetical protein F55C12.6 [Caenorhabditis elegans] 3.0E-30
Protein Domains
Database ID Description E-Value
Pfam IPR009658 EMBL-EBI Protein of unknown function DUF1248 1.5E-8
Pfam IPR009658 EMBL-EBI Protein of unknown function DUF1248 1.5E-8
Pfam IPR009658 EMBL-EBI Protein of unknown function DUF1248 1.5E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000010409 4 4-26,47-69,84-106,157-179
Sequence
Target Sequence 
>C. ELEGANS:177607_S_AT
gaattctggtggttgtgtcgactcaaagtacgccgccgtttggagaaaggttctgcatac
aaaagttcgtggaccaacttactacgtgtcacactacaaacctgacgaggttttcaatcc
agaactagagtttgatgacgtagttaagtttagtgatgttccagttgaacatgttgtcaa
gtatgacaattcaattttcccatatgaacgtaaagaatacattttggcaaagttcaagaa
tggagttggaagagttgcttataacaaatcgggagaagttatcggaattggtttggtttc
cactgaatcttctggaaactgtgaaattggcccaatctactgtgacaacaagaatgcagc
tcaggctattttccaaagtattattcaagatcttcccatgaaagatctcaaagatgttct
cgttcgttgcagtgataagtttgaagacagtgctacttggattcgcccattccttcgtcg
cagccacgaaatgacaccattcgctcacatcaagttcaatcgtgtcattcccgatggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATTCTGGTGGTTGTGTCGACTCA 87 325 486 Antisense
CTCAAAGTACGCCGCCGTTTGGAGA 227 227 507 Antisense
GGACCAACTTACTACGTGTCACACT 80 523 556 Antisense
CCTGACGAGGTTTTCAATCCAGAAC 306 267 586 Antisense
GGTTTGGTTTCCACTGAATCTTCTG 480 503 775 Antisense
AATTGGCCCAATCTACTGTGACAAC 495 177 810 Antisense
GAATGCAGCTCAGGCTATTTTCCAA 560 331 837 Antisense
AGATGTTCTCGTTCGTTGCAGTGAT 253 67 897 Antisense
GTCGCAGCCACGAAATGACACCATT 362 475 962 Antisense
ACCATTCGCTCACATCAAGTTCAAT 692 85 981 Antisense
GTTCAATCGTGTCATTCCCGATGGC 353 445 999 Antisense
Sequence Source Affymetrix Proprietary Database