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[177605_at] 7TM receptor, srx family

Description F49C5.1 /REP_DB=WormBase Gene ID /WP=CE16078 /TR=O17876 /GB=CAB04430.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 63      4grp_total > 04      6grp_cgc > 93      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 8.8
(-2.4)
A 		5.2
(-3)
A 		5.3
(-3)
A 		38.9
(3)
A 		34
B 13.7
(3)
A 		4.3
(-2.2)
A 		2.9
(-3)
A 		4.2
(-2.3)
A 		11
C 3.1
(-3)
A 		10.6
(3)
A 		8.5
(1.3)
A 		9.3
(2)
A 		8
avr 8.5
(-1.5) 		6.7
(-2.4) 		5.6
(-3) 		17.5
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 10.8
(-1.8)
A 		2.8
(-3)
A 		41.6
(3)
A 		38.5
(2.5)
A 		4.1
(-2.8)
A 		8.7
(-2.1)
A 		39
B 17.9
(1.6)
A 		4.5
(-2.3)
A 		9.4
(-0.9)
A 		22.7
(3)
A 		10.7
(-0.5)
A 		2.2
(-3)
A 		21
C 1.7
(-2.9)
A 		6.9
(-2.2)
A 		42.5
(3)
A 		9.5
(-1.8)
A 		1.2
(-3)
A 		12
(-1.4)
A 		41
avr 10.1
(-1.8) 		4.7
(-3) 		31.2
(3) 		23.6
(1.3) 		5.3
(-2.9) 		7.6
(-2.3) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 3.2
(-0.3)
A 		1.1
(-3)
A 		1.4
(-2.6)
A 		5.7
(3)
A 		5
B 4.4
(3)
A 		1.1
(-2.4)
A 		0.7
(-3)
A 		0.9
(-2.7)
A 		4
C 1
(-3)
A 		3
(3)
A 		3
(3)
A 		1.6
(-1.2)
A 		2
avr 2.9
(3) 		1.7
(-3) 		1.7
(-3) 		2.7
(2) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 2
(-2.3)
A 		1
(-3)
A 		9
(2.5)
A 		9.8
(3)
A 		1.2
(-2.9)
A 		2.1
(-2.3)
A 		9
B 6.2
(3)
A 		1.5
(-2.2)
A 		2.3
(-1.3)
A 		6
(2.8)
A 		4.3
(0.9)
A 		0.8
(-3)
A 		5
C 0.6
(-2.9)
A 		2.1
(-2)
A 		10.8
(3)
A 		1.9
(-2.1)
A 		0.4
(-3)
A 		4
(-0.9)
A 		10
avr 2.9
(-1.6) 		1.5
(-3) 		7.4
(3) 		5.9
(1.5) 		2
(-2.5) 		2.3
(-2.2) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177605_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3996
Sequence Type Exemplar sequence
Representative Public ID F49C5.1 NCBI
Target Description F49C5.1 /REP_DB=WormBase Gene ID /WP=CE16078 /TR=O17876 /GB=CAB04430.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064275(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064275 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-119) (srx-119) mRNA, complete cds. 9/11 None
F49C5.1 ENSEMBL cdna:known chromosome:CEL140:II:12528150:12529612:1 gene:F49C5.1 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000035410 7/11 Cross Hyb Matching Probes None
GENEFINDER00000035425 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12528680-12529609(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor, srx family
Gene Symbol srx-119
Ensembl F49C5.1
Entrez Gene 186012 Entrez gene
SwissProt O17876 EMBL-EBI
WormBase CE36303 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04430 Hypothetical protein F49C5.1 [Caenorhabditis elegans] ref|NP_496676.2| Serpentine Receptor, class X family member (srx-119) [Caenorhabditis elegans] 1.0E-170
blast CAB04431 Hypothetical protein F49C5.2 [Caenorhabditis elegans] ref|NP_496677.2| Serpentine Receptor, class X family member (srx-120) [Caenorhabditis elegans] 1.0E-129
blast AAF99934 Serpentine receptor, class x protein 122 [Caenorhabditis elegans] ref|NP_503912.2| Serpentine Receptor, class X family member (srx-122) [Caenorhabditis elegans] 1.0E-126
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496676.2 7 25-47,68-87,97-119,143-160,193-215,236-258,268-290
F49C5.1 7 25-47,68-87,97-119,143-160,193-215,236-258,268-290
Sequence
Target Sequence 
>C. ELEGANS:177605_AT
ggatggagcattgggccgttatcacagattttattggccattaaccggataactgctgtc
tactttccatttttgcacatgacaaagtatcgtataaatcctacagatcccgatccaaca
gtttcgagtgctcaactggaatatcgtcatagaaaaaaccggaaattaataattcaagca
attgttcaaagcatccttattatagtcgactcacttaactctacaataacctataacata
tttccaaatttattttttcaattcataactctctcattttcaatggtatttttaagaact
ctggaggggttcgtaatattttctatcaatgatactgttaatgaagaagtgaggaaaatt
attagagtcaagatttttggtctgaagcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATGGAGCATTGGGCCGTTATCAC 101 515 37 Antisense
GCATTGGGCCGTTATCACAGATTTT 564 307 44 Antisense
CACAGATTTTATTGGCCATTAACCG 381 195 59 Antisense
GGCCATTAACCGGATAACTGCTGTC 534 543 72 Antisense
GGATAACTGCTGTCTACTTTCCATT 413 511 83 Antisense
GTCTACTTTCCATTTTTGCACATGA 63 469 94 Antisense
GTATCGTATAAATCCTACAGATCCC 528 453 123 Antisense
TAAATCCTACAGATCCCGATCCAAC 515 641 131 Antisense
GTTTCGAGTGCTCAACTGGAATATC 99 451 157 Antisense
GAGGGGTTCGTAATATTTTCTATCA 630 401 340 Antisense
GAGTCAAGATTTTTGGTCTGAAGCC 643 397 401 Antisense
Sequence Source Affymetrix Proprietary Database