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[177604_at]

Description F52B5.4 /REP_DB=WormBase Gene ID /WP=CE05719 /TR=Q20645 /GB=CAA99856.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 86      4grp_total > 02      6grp_cgc > 68      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 122
1 2 3 4 range
A 20
(-3)
A 		44.6
(-1.8)
A 		46.9
(-1.6)
A 		138.7
(3)
A 		119
B 49.1
(-1.6)
A 		28.5
(-3)
A 		42.8
(-2)
A 		115.1
(3)
P 		87
C 55.1
(-1.7)
A 		53.1
(-1.8)
A 		31.6
(-3)
A 		141.5
(3)
P 		110
avr 41.4
(-2.9) 		42.1
(-2.9) 		40.4
(-3) 		131.8
(3) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 246
1 2 3 4 5 6 range
A 48.2
(-3)
A 		47
(-3)
A 		58.5
(-2.5)
M 		89.9
(-1.3)
P 		115.7
(-0.2)
P 		194.6
(3)
P 		148
B 15.8
(-3)
A 		48.7
(-2.1)
A 		44.7
(-2.2)
P 		99
(-0.8)
P 		169.8
(1)
P 		246.7
(3)
P 		231
C 29.7
(-3)
A 		55.9
(-2.3)
P 		90.1
(-1.4)
M 		102
(-1.1)
P 		140.7
(-0.1)
P 		262.2
(3)
P 		233
avr 31.2
(-3) 		50.5
(-2.4) 		64.4
(-2) 		97
(-1.1) 		142.1
(0.3) 		234.5
(3) 		203
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 7.3
(-3)
A 		9.7
(-1.9)
A 		12.3
(-0.7)
A 		20.3
(3)
A 		13
B 15.7
(-0)
A 		7
(-3)
A 		9.9
(-2)
A 		24.5
(3)
P 		18
C 18.2
(0.3)
A 		15.3
(-1)
A 		11
(-3)
A 		23.9
(3)
P 		13
avr 13.7
(-1.5) 		10.7
(-3) 		11.1
(-2.8) 		22.9
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 8.9
(-3)
A 		16.7
(-1.8)
A 		12.8
(-2.4)
M 		22.8
(-0.8)
P 		34.9
(1.1)
P 		47.4
(3)
P 		39
B 5.5
(-3)
A 		16.2
(-2.3)
A 		10.8
(-2.6)
P 		26.2
(-1.6)
P 		69
(1.4)
P 		92
(3)
P 		87
C 11
(-3)
A 		17
(-2.5)
P 		22.9
(-2.1)
M 		20.5
(-2.3)
P 		45.5
(-0.3)
P 		87.8
(3)
P 		77
avr 8.5
(-3) 		16.6
(-2.3) 		15.5
(-2.4) 		23.2
(-1.7) 		49.8
(0.7) 		75.7
(3) 		67
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177604_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2318
Sequence Type Exemplar sequence
Representative Public ID F52B5.4 NCBI
Target Description F52B5.4 /REP_DB=WormBase Gene ID /WP=CE05719 /TR=Q20645 /GB=CAA99856.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026307(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026307 NCBI Caenorhabditis elegans C.Elegans P-53-like protein family member (cep-1) (cep-1) mRNA, complete cds. 11/11 None
SNAP00000039362 ENSEMBL cdna:SNAP chromosome:CEL140:I:8332425:8336831:1 11/11 None
GENEFINDER00000039364 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8332425:8336831:1 11/11 None
F52B5.5.2 ENSEMBL cdna:known chromosome:CEL140:I:8332244:8336943:1 gene:F52B5.5 11/11 None
F52B5.5.1 ENSEMBL cdna:known chromosome:CEL140:I:8332417:8336974:1 gene:F52B5.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
172616 2 1 NM_001026307 177604_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8332149-8333293(+) 100.0 100.0
Public Domain and Genome References
Ensembl F52B5.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99857 Hypothetical protein F52B5.5a [Caenorhabditis elegans] gb|AAL28139.1| transcription factor CEP-1 [Caenorhabditis elegans] ref|NP_001021478.1| C.Elegans P-53-like protein family member (cep-1) [Caenorhabditis elegans] 0.0
blast 1T4W Chain , Structural Differences In The Dna Binding Domains Of Human P53 And Its C. Elegans Ortholog Cep-1: Structure Of C. Elegans Cep-1 1.0E-112
Sequence
Target Sequence 
>C. ELEGANS:177604_AT
ggaacccgatgattcacaactcagtgatattttgaaagatgcaagaatacccgattcgca
ggacatcggcgtaaatttgacacaaaatctaagcttcgacactgtccagaaaatgataga
cggagtattcactccaatattcagtcaagggactgaagattcactggaaaaagatatatt
aaagacgcctggaatttcaactatctataacggaatactgggcaatggcgaggaaaccaa
gaaaagaacgccaaagatttccgatgctttcgaaccggatttgaatacttctggagatgt
attcgacagtgataaatcagaagatggtttaatgaatgatgaatcatatctatcgaatac
aacgttgtcgcaagttgtgctcgactcccaaaagtatgaatatcttcgagtacgtacaga
ggaagaacagcaacttgtaattgagaagcgtgccagagaacgatttattcgaaaatcgat
gaaaatcgcggaagaaacagcattatcctatgaaaatgacggatcgagagagctttctga
aa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAACCCGATGATTCACAACTCAGT 88 531 123 Antisense
AAGAATACCCGATTCGCAGGACATC 360 151 165 Antisense
GGACATCGGCGTAAATTTGACACAA 318 525 183 Antisense
AAATCTAAGCTTCGACACTGTCCAG 531 115 207 Antisense
GTATTCACTCCAATATTCAGTCAAG 462 453 247 Antisense
AGACGCCTGGAATTTCAACTATCTA 102 69 305 Antisense
AGAACGCCAAAGATTTCCGATGCTT 672 71 367 Antisense
CGATGCTTTCGAACCGGATTTGAAT 90 249 384 Antisense
GTTGTCGCAAGTTGTGCTCGACTCC 168 437 486 Antisense
TGTGCTCGACTCCCAAAAGTATGAA 626 555 498 Antisense
GACGGATCGAGAGAGCTTTCTGAAA 320 375 640 Antisense
Sequence Source Affymetrix Proprietary Database