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[177603_at]

Description C27C7.7 /REP_DB=WormBase Gene ID /WP=CE18537 /TR=Q9XVC9 /GB=CAB03926.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 6.3
(-2)
A 		2.4
(-3)
A 		3.1
(-2.8)
A 		25.9
(3)
A 		24
B 10.8
(3)
A 		2.5
(-3)
A 		2.9
(-2.7)
A 		4.6
(-1.5)
A 		8
C 2.4
(-3)
A 		5.2
(3)
A 		3.5
(-0.6)
A 		3.5
(-0.6)
A 		3
avr 6.5
(-0.6) 		3.4
(-2.9) 		3.2
(-3) 		11.3
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 6
(3)
A 		1.6
(-3)
A 		2
(-2.5)
A 		2.9
(-1.2)
A 		6
(3)
A 		1.9
(-2.6)
A 		4
B 3.9
(-1.2)
A 		4.1
(-1)
A 		2
(-2.5)
A 		2
(-2.5)
A 		9.8
(3)
A 		1.3
(-3)
A 		9
C 5.4
(1.3)
A 		5.9
(1.7)
A 		7.2
(3)
A 		7
(2.8)
A 		2.8
(-1.3)
A 		1
(-3)
A 		6
avr 5.1
(1.6) 		3.9
(0.1) 		3.7
(-0.1) 		4
(0.3) 		6.2
(3) 		1.4
(-3) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 2.3
(0.3)
A 		0.5
(-3)
A 		0.8
(-2.5)
A 		3.8
(3)
A 		3
B 3.4
(3)
A 		0.6
(-3)
A 		0.7
(-2.8)
A 		1
(-2.1)
A 		3
C 0.8
(-1.7)
A 		1.5
(3)
A 		1.2
(1)
A 		0.6
(-3)
A 		1
avr 2.2
(3) 		0.9
(-3) 		0.9
(-3) 		1.8
(1.2) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 1.1
(0)
A 		0.6
(-2.1)
A 		0.4
(-3)
A 		0.7
(-1.7)
A 		1.8
(3)
A 		0.5
(-2.6)
A 		1
B 1.4
(-1.5)
A 		1.4
(-1.5)
A 		0.5
(-3)
A 		0.5
(-3)
A 		4
(3)
A 		0.5
(-3)
A 		4
C 2
(3)
A 		1.8
(2.3)
A 		1.8
(2.3)
A 		1.4
(0.9)
A 		0.9
(-0.9)
A 		0.3
(-3)
A 		2
avr 1.5
(0.7) 		1.3
(0) 		0.9
(-1.3) 		0.9
(-1.3) 		2.2
(3) 		0.4
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177603_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2209
Sequence Type Exemplar sequence
Representative Public ID C27C7.7 NCBI
Target Description C27C7.7 /REP_DB=WormBase Gene ID /WP=CE18537 /TR=Q9XVC9 /GB=CAB03926.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060516(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060516 NCBI Caenorhabditis elegans C27C7.7 (C27C7.7) mRNA, complete cds. 11/11 None
GENEFINDER00000039068 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11430313:11431700:1 11/11 None
SNAP00000039059 ENSEMBL cdna:SNAP chromosome:CEL140:I:11430434:11431723:1 11/11 None
C27C7.7 ENSEMBL cdna:known chromosome:CEL140:I:11430313:11431723:1 gene:C27C7.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11430243-11431654(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C27C7.7
Entrez Gene 182959 Entrez gene
SwissProt Q9XVC9 EMBL-EBI
WormBase CE18537 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03926 Hypothetical protein C27C7.7 [Caenorhabditis elegans] ref|NP_492917.1| C27C7.7 [Caenorhabditis elegans] 1.0E-172
blast CAB03926 Hypothetical protein C27C7.7 [Caenorhabditis elegans] ref|NP_492917.1| C27C7.7 [Caenorhabditis elegans] 1.0E-170
blast CAB03926 Hypothetical protein C27C7.7 [Caenorhabditis elegans] ref|NP_492917.1| C27C7.7 [Caenorhabditis elegans] 1.0E-164
blast CAB60370 Hypothetical protein Y46G5A.27 [Caenorhabditis elegans] ref|NP_496732.1| Patterned Expression Site family member (pes-10) [Caenorhabditis elegans] sp|P41991|PES10_CAEEL Protein pes-10 gb|AAA50369.1| PES-10 9.0E-44
blast CAB60370 Hypothetical protein Y46G5A.27 [Caenorhabditis elegans] ref|NP_496732.1| Patterned Expression Site family member (pes-10) [Caenorhabditis elegans] sp|P41991|PES10_CAEEL Protein pes-10 gb|AAA50369.1| PES-10 2.0E-37
blast CAB60371 Hypothetical protein Y46G5A.28 [Caenorhabditis elegans] ref|NP_496733.1| Y46G5A.28 [Caenorhabditis elegans] 4.0E-37
blast CAB60370 Hypothetical protein Y46G5A.27 [Caenorhabditis elegans] ref|NP_496732.1| Patterned Expression Site family member (pes-10) [Caenorhabditis elegans] sp|P41991|PES10_CAEEL Protein pes-10 gb|AAA50369.1| PES-10 4.0E-36
blast CAB60371 Hypothetical protein Y46G5A.28 [Caenorhabditis elegans] ref|NP_496733.1| Y46G5A.28 [Caenorhabditis elegans] 5.0E-33
Protein Domains
Database ID Description E-Value
Pfam IPR009819 EMBL-EBI Pes-10 1.0E-126
Pfam IPR009819 EMBL-EBI Pes-10 1.0E-126
Pfam IPR009819 EMBL-EBI Pes-10 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:177603_AT
taaagatcaccagcgcaatcaccttgctcggcacccttgctccatcattagctttatacc
gaaaatacaatattcaatatttgatctaccagcatggcatcaaatgtgctctcgagctat
gggatatgctcgaacacacggagcatctggaaatggctcaggagaagctggaggccttca
aaaaatttataacggaaagttataaccagtcaccggtgacaggtactacggtagctgtgc
tcacggagcatttgaaggaagacgaggagtttgtggttcggagcacactggagttcttcc
tgaaaatgccgatttcgttggagcaatttgagcaaaaccggtcagaatttgtcattcgcg
agcttgaagaatctgatctcgcagttctagttatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAAGATCACCAGCGCAATCACCTT 377 641 575 Antisense
ACCCTTGCTCCATCATTAGCTTTAT 119 91 607 Antisense
ATGGCATCAAATGTGCTCTCGAGCT 291 51 668 Antisense
GCTATGGGATATGCTCGAACACACG 448 303 690 Antisense
CGAACACACGGAGCATCTGGAAATG 257 253 705 Antisense
GGCTCAGGAGAAGCTGGAGGCCTTC 431 539 729 Antisense
CAGTCACCGGTGACAGGTACTACGG 370 207 781 Antisense
GTACTACGGTAGCTGTGCTCACGGA 24 459 797 Antisense
GGAGCACACTGGAGTTCTTCCTGAA 190 521 854 Antisense
GAATTTGTCATTCGCGAGCTTGAAG 529 325 919 Antisense
ATCTGATCTCGCAGTTCTAGTTATC 450 33 945 Antisense
Sequence Source Affymetrix Proprietary Database