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[177601_at]

Description ZK809.3 /REP_DB=WormBase Gene ID /WP=CE03831 /TR=Q23597 /GB=CAA92637.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 60      4grp_highest_8_8 > 04      4grp_high_8_8 > 38      6grp_highest_nonorm > 27      6grp_total > 61      4grp_total > 33      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3804
1 2 3 4 range
A 6736.2
(-3)
P 		7263.7
(-1.2)
P 		8525.9
(3)
P 		7015.7
(-2.1)
P 		1790
B 4862.3
(-3)
P 		8666.4
(3)
P 		6186.5
(-0.9)
P 		7698
(1.5)
P 		3804
C 6401.4
(-3)
P 		7167
(3)
P 		6997.7
(1.7)
P 		7122
(2.6)
P 		766
avr 6000
(-3) 		7699
(3) 		7236.7
(1.4) 		7278.6
(1.5) 		1699

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3839
1 2 3 4 5 6 range
A 5993
(-1.6)
P 		6847.6
(-0.2)
P 		8071.7
(1.8)
P 		8829.3
(3)
P 		6338.1
(-1.1)
P 		5159.5
(-3)
P 		3670
B 7014.2
(0.8)
P 		7056.8
(0.8)
P 		6912.9
(0.6)
P 		8190.8
(3)
P 		6991.5
(0.7)
P 		5030
(-3)
P 		3161
C 6567.9
(-0.5)
P 		7068
(0.3)
P 		8724.6
(3)
P 		8488.8
(2.6)
P 		7076.8
(0.4)
P 		4990.6
(-3)
P 		3734
avr 6525
(-0.4) 		6990.8
(0.4) 		7903.1
(2) 		8503
(3) 		6802.1
(0) 		5060
(-3) 		3443
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1426
1 2 3 4 range
A 2452.6
(3)
P 		1576.8
(-0.7)
P 		2228.8
(2.1)
P 		1027
(-3)
P 		1426
B 1550.5
(-2)
P 		2140.4
(3)
P 		1433.6
(-3)
P 		1640.4
(-1.2)
P 		707
C 2119.1
(1.5)
P 		2060.5
(1.2)
P 		2438.9
(3)
P 		1200.9
(-3)
P 		1238
avr 2040.7
(3) 		1925.9
(2.1) 		2033.8
(2.9) 		1289.4
(-3) 		751

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1736
1 2 3 4 5 6 range
A 1104.8
(-3)
P 		2435.3
(3)
P 		1757.8
(-0.1)
P 		2239.3
(2.1)
P 		1912.5
(0.6)
P 		1256.2
(-2.3)
P 		1331
B 2440.6
(0.9)
P 		2348.9
(0.5)
P 		1678.7
(-3)
P 		2169.5
(-0.5)
P 		2840.6
(3)
P 		1875.7
(-2)
P 		1162
C 2434.4
(3)
P 		2156.7
(0.8)
P 		2220.6
(1.3)
P 		1707.1
(-2.7)
P 		2289.9
(1.9)
P 		1670.7
(-3)
P 		764
avr 1993.3
(0.2) 		2313.6
(2.7) 		1885.7
(-0.7) 		2038.6
(0.5) 		2347.7
(3) 		1600.9
(-3) 		747
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177601_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9701
Sequence Type Exemplar sequence
Representative Public ID ZK809.3 NCBI
Target Description ZK809.3 /REP_DB=WormBase Gene ID /WP=CE03831 /TR=Q23597 /GB=CAA92637.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069802(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069802 NCBI Caenorhabditis elegans ZK809.3 (ZK809.3) mRNA, complete cds. 11/11 A 
SNAP00000011186 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11652379:11653283:1 11/11 None
GENEFINDER00000011194 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11652379:11653283:1 11/11 None
ZK809.3.2 ENSEMBL cdna:known chromosome:CEL140:IV:11652371:11653431:1 gene:ZK809.3 11/11 A 
ZK809.3.3 ENSEMBL cdna:known chromosome:CEL140:IV:11652371:11653360:1 gene:ZK809.3 11/11 None
ZK809.3.1 ENSEMBL cdna:known chromosome:CEL140:IV:11652373:11653431:1 gene:ZK809.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11652384-11653289(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK809.3
Entrez Gene 178096 Entrez gene
SwissProt Q23597 EMBL-EBI
WormBase CE03831 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92637 Hypothetical protein ZK809.3 [Caenorhabditis elegans] ref|NP_502203.1| ZK809.3 [Caenorhabditis elegans] 1.0E-124
blast CAE62078 Hypothetical protein CBG06101 [Caenorhabditis briggsae] 1.0E-121
Sequence
Target Sequence 
>C. ELEGANS:177601_AT
ccaccggcgcttgtcaagactggtgacaagcctcttcacagagtgaatgaccgcatgtct
ctcgagctccacatggccgatgagcgtgttcgtgccgctggtttgagcccagccgaaaga
gaatggagaaagaagtgggttcatgaccagcaccttcacgctgacgagccagtcgttgtc
gatgccgttcatcgtcagttgaacccaatcagaaccgcttacagacttccatgggacaag
ttctatcttcattacctcaagccaacattcggagtttactatggaaccgctatcagagtt
acagctccaaaattgctcatggctttcgtcgttgtgcagactgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCACCGGCGCTTGTCAAGACTGGTG 69 275 79 Antisense
GACTGGTGACAAGCCTCTTCACAGA 537 375 96 Antisense
GAGTGAATGACCGCATGTCTCTCGA 509 401 119 Antisense
ACATGGCCGATGAGCGTGTTCGTGC 710 105 149 Antisense
GAAGTGGGTTCATGACCAGCACCTT 257 335 210 Antisense
TGACGAGCCAGTCGTTGTCGATGCC 4 571 240 Antisense
GTTGAACCCAATCAGAACCGCTTAC 50 369 276 Antisense
AACCGCTTACAGACTTCCATGGGAC 578 145 291 Antisense
AGTTCTATCTTCATTACCTCAAGCC 665 63 317 Antisense
CAAAATTGCTCATGGCTTTCGTCGT 676 189 386 Antisense
GGCTTTCGTCGTTGTGCAGACTGCC 617 537 399 Antisense
Sequence Source Affymetrix Proprietary Database