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[177599_at]

Description R07B5.6 /REP_DB=WormBase Gene ID /WP=CE06260 /TR=Q21787 /GB=CAA96666.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 16      6grp_total_sub > Hat      6grp_cgc > 64      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 121
1 2 3 4 range
A 61
(-2.9)
A 		58.4
(-3)
A 		142.8
(1.5)
A 		172
(3)
P 		114
B 73.9
(-0.2)
A 		91.4
(2.4)
A 		55.3
(-3)
A 		95.6
(3)
A 		40
C 51.5
(-3)
A 		95
(3)
A 		55.4
(-2.5)
A 		81.3
(1.1)
P 		44
avr 62.1
(-3) 		81.6
(-0.8) 		84.5
(-0.5) 		116.3
(3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 59.2
(-2.6)
A 		63.3
(-2.2)
A 		109.2
(2.4)
P 		55
(-3)
A 		114.9
(3)
A 		68.9
(-1.6)
A 		60
B 31
(-3)
A 		91
(1.7)
M 		51.5
(-1.4)
A 		107.4
(3)
A 		70.4
(0.1)
A 		47.9
(-1.7)
A 		76
C 44.6
(-1.2)
A 		94.5
(3)
A 		28.4
(-2.6)
A 		53.4
(-0.5)
A 		23.7
(-3)
A 		65.5
(0.5)
A 		71
avr 44.9
(-3) 		82.9
(3) 		63
(-0.1) 		71.9
(1.3) 		69.7
(0.9) 		60.8
(-0.5) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 22.2
(-0.7)
A 		12.7
(-3)
A 		37.3
(3)
A 		25.2
(0)
P 		25
B 23.6
(3)
A 		22.6
(2.4)
A 		12.8
(-3)
A 		20.4
(1.2)
A 		11
C 17
(-1.5)
A 		27.3
(3)
A 		19.3
(-0.5)
A 		13.7
(-3)
P 		14
avr 20.9
(-1) 		20.9
(-1) 		23.1
(3) 		19.8
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 10.9
(-3)
A 		22.5
(-0.1)
A 		23.8
(0.3)
P 		14
(-2.2)
A 		34.7
(3)
A 		16.8
(-1.5)
A 		24
B 10.8
(-3)
A 		30.3
(3)
M 		12.5
(-2.5)
A 		28.4
(2.4)
A 		28.6
(2.5)
A 		17.9
(-0.8)
A 		20
C 16.5
(-0.4)
A 		28.8
(3)
A 		7.2
(-3)
A 		10.7
(-2)
A 		7.7
(-2.9)
A 		21.9
(1.1)
A 		22
avr 12.7
(-3) 		27.2
(3) 		14.5
(-2.3) 		17.7
(-0.9) 		23.7
(1.6) 		18.9
(-0.4) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177599_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11547
Sequence Type Exemplar sequence
Representative Public ID R07B5.6 NCBI
Target Description R07B5.6 /REP_DB=WormBase Gene ID /WP=CE06260 /TR=Q21787 /GB=CAA96666.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073139(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073139 NCBI Caenorhabditis elegans Serpentine Receptor, class U family member (sru-36) (sru-36) mRNA, complete cds. 11/11 None
SNAP00000041729 ENSEMBL cdna:SNAP chromosome:CEL140:V:9845073:9845761:1 9/11 None
GENEFINDER00000041735 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9844274:9845761:1 11/11 None
R07B5.6 ENSEMBL cdna:known chromosome:CEL140:V:9844274:9845761:1 gene:R07B5.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9844273-9845761(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol sru-36
Ensembl R07B5.6
Entrez Gene 187653 Entrez gene
SwissProt Q21787 EMBL-EBI
WormBase CE06260 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA96666 Hypothetical protein R07B5.6 [Caenorhabditis elegans] ref|NP_505540.1| Serpentine Receptor, class U family member (sru-36) [Caenorhabditis elegans] 1.0E-154
blast CAA96666 Hypothetical protein R07B5.6 [Caenorhabditis elegans] ref|NP_505540.1| Serpentine Receptor, class U family member (sru-36) [Caenorhabditis elegans] 2.0E-96
blast CAA92285 Hypothetical protein C33D9.4 [Caenorhabditis elegans] ref|NP_501518.1| Serpentine Receptor, class U family member (sru-35) [Caenorhabditis elegans] 1.0E-71
blast CAE72265 Hypothetical protein CBG19385 [Caenorhabditis briggsae] 1.0E-68
Protein Domains
Database ID Description E-Value
Pfam IPR003839 EMBL-EBI Protein of unknown function DUF215 2.3E-50
Pfam IPR003839 EMBL-EBI Protein of unknown function DUF215 9.5E-22
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505540.1 6 20-42,62-84,107-129,150-172,200-222,252-274
R07B5.6 6 20-42,62-84,107-129,150-172,200-222,252-274
SNAP00000041729 3 2-24,53-75,105-127
GENEFINDER00000041735 6 20-42,62-84,107-129,150-172,200-222,252-274
Sequence
Target Sequence 
>C. ELEGANS:177599_AT
aattcttccacttctactatgtttgatcagattgattattctaatttatccgaaagatca
ccccatgatttgctccaaaataatgataatttcacttccactgttatttctcattccact
ttgctgtacttcattcatgattcctgctctcggatactgtagacaaatgggttctccttt
gaattacggcgctacgtatatatactattctggcggatgggatggatggcgaaactccta
cattcatctggttatgtctattgtaatgtgttcattgacaattttgtgctccgtggttat
gttgtttaaattgagacaatctgtgttcagcaattcgtcagcaagaacaaaagaacaatc
aaaacgagcagaatcgtcattatcattcactatgatttcgtttattattccatttataaa
taatacaatgctgacgatagtgtatctcacttttcctggatgggtgtatcatatgatgat
atttcgtccatttggaaatgattgtgagaccgtgatgatgccgtggattctttatatgac
ccatcccatgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTCTTCCACTTCTACTATGTTTG 624 175 372 Antisense
GAAAGATCACCCCATGATTTGCTCC 101 361 423 Antisense
AATTTCACTTCCACTGTTATTTCTC 419 175 459 Antisense
TTATTTCTCATTCCACTTTGCTGTA 564 679 475 Antisense
TCCACTTTGCTGTACTTCATTCATG 245 589 486 Antisense
TCATGATTCCTGCTCTCGGATACTG 188 623 506 Antisense
GTTCTCCTTTGAATTACGGCGCTAC 29 443 542 Antisense
GCGAAACTCCTACATTCATCTGGTT 452 289 600 Antisense
TGTATCTCACTTTTCCTGGATGGGT 74 561 812 Antisense
GAGACCGTGATGATGCCGTGGATTC 279 395 877 Antisense
ATTCTTTATATGACCCATCCCATGT 404 11 898 Antisense
Sequence Source Affymetrix Proprietary Database