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[177598_at]

Description T26C5.4 /REP_DB=WormBase Gene ID /WP=CE03740 /TR=Q22817 /GB=CAA90729.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 49      6grp_high1_10_10 > 94      4grp_highest_8_8 > 04      4grp_high_8_8 > 30      6grp_highest_nonorm > 97      6grp_total > 84      4grp_total > 33      6grp_highest_sub > 04_05_06      6grp_high1_sub > In      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 401
1 2 3 4 range
A 286.7
(-3)
P 		595.8
(1.9)
P 		544.8
(1.1)
P 		664.2
(3)
P 		378
B 262.9
(-3)
P 		569.6
(3)
P 		495.3
(1.5)
P 		545.7
(2.5)
P 		307
C 355.6
(-3)
P 		588.7
(2.8)
P 		496.2
(0.5)
P 		597.9
(3)
P 		242
avr 301.7
(-3) 		584.7
(2.6) 		512.1
(1.2) 		602.6
(3) 		301

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 949
1 2 3 4 5 6 range
A 449.7
(-3)
P 		942.7
(0.5)
P 		980.7
(0.8)
P 		1088.7
(1.6)
P 		1287.3
(3)
P 		1262.1
(2.8)
P 		838
B 421.6
(-3)
P 		752.4
(-0.6)
P 		1005
(1.2)
P 		886.1
(0.4)
P 		1251.9
(3)
P 		1023.6
(1.4)
P 		830
C 488.4
(-3)
P 		707
(-1.5)
P 		1210.8
(1.9)
P 		1152.8
(1.5)
P 		1370.2
(3)
P 		1306.4
(2.6)
P 		882
avr 453.2
(-3) 		800.7
(-0.5) 		1065.5
(1.3) 		1042.5
(1.2) 		1303.1
(3) 		1197.4
(2.3) 		850
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 104.4
(-2)
P 		129.3
(1.3)
P 		142.4
(3)
P 		97.2
(-3)
P 		45
B 83.8
(-3)
P 		140.7
(3)
P 		114.8
(0.3)
P 		116.3
(0.4)
P 		57
C 117.7
(-1.6)
P 		169.3
(2.7)
P 		172.9
(3)
P 		100.8
(-3)
P 		72
avr 102
(-3) 		146.4
(3) 		143.4
(2.6) 		104.8
(-2.6) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 426
1 2 3 4 5 6 range
A 82.9
(-3)
P 		335.3
(2)
P 		213.6
(-0.4)
P 		276.1
(0.8)
P 		388.4
(3)
P 		307.3
(1.4)
P 		306
B 146.7
(-3)
P 		250.4
(-1.3)
P 		244
(-1.4)
P 		234.7
(-1.5)
P 		508.6
(3)
P 		381.7
(0.9)
P 		362
C 181
(-3)
P 		215.7
(-2.2)
P 		308.2
(-0.1)
P 		231.8
(-1.8)
P 		443.4
(3)
P 		437.3
(2.9)
P 		262
avr 136.9
(-3) 		267.1
(-0.5) 		255.3
(-0.7) 		247.5
(-0.9) 		446.8
(3) 		375.4
(1.6) 		310
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177598_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3149
Sequence Type Exemplar sequence
Representative Public ID T26C5.4 NCBI
Target Description T26C5.4 /REP_DB=WormBase Gene ID /WP=CE03740 /TR=Q22817 /GB=CAA90729.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063570(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063570 NCBI Caenorhabditis elegans T26C5.4 (T26C5.4) mRNA, complete cds. 11/11 None
SNAP00000039784 ENSEMBL cdna:SNAP chromosome:CEL140:II:9249044:9250343:-1 11/11 None
GENEFINDER00000039785 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9249044:9249924:-1 9/11 None
T26C5.4 ENSEMBL cdna:known chromosome:CEL140:II:9249044:9250343:-1 gene:T26C5.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9249040-9250340(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T26C5.4
Entrez Gene 188916 Entrez gene
SwissProt Q22817 EMBL-EBI
WormBase CE03740 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90729 Hypothetical protein T26C5.4 [Caenorhabditis elegans] ref|NP_495971.1| T26C5.4 [Caenorhabditis elegans] 2.0E-76
blast CAA90729 Hypothetical protein T26C5.4 [Caenorhabditis elegans] ref|NP_495971.1| T26C5.4 [Caenorhabditis elegans] 6.0E-63
blast CAE57896 Hypothetical protein CBG00945 [Caenorhabditis briggsae] 2.0E-55
blast CAE57896 Hypothetical protein CBG00945 [Caenorhabditis briggsae] 2.0E-46
Sequence
Target Sequence 
>C. ELEGANS:177598_AT
gtggtcaactattttctttgtattttcaacatttgttttaattgtggattcaggaagtgt
tggattatgccgaaccgagtgcattgagcaaaattctcgaaaaatcgttcgagtacactt
gaaagatcaattggtgatggctggattgtgcaataataacacacaacaaactggatcaat
tgtcacaccatacgtctgtcacagaaatatcggattgtggactttggatgaattggacga
ggaaggaaccgtcaaatttgaaacactttgccccacacctgaacagtatcctttggagct
ccgtgctacatgcccacgagttgatgcccaacacgatgacaccccgaatgaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGTCAACTATTTTCTTTGTATTT 306 489 15 Antisense
GGAAGTGTTGGATTATGCCGAACCG 354 525 67 Antisense
TGCCGAACCGAGTGCATTGAGCAAA 90 585 82 Antisense
GGATCAATTGTCACACCATACGTCT 316 509 187 Antisense
TCACACCATACGTCTGTCACAGAAA 120 629 197 Antisense
CAAATTTGAAACACTTTGCCCCACA 532 119 267 Antisense
CCCCACACCTGAACAGTATCCTTTG 7 263 285 Antisense
AACAGTATCCTTTGGAGCTCCGTGC 160 137 296 Antisense
TCCGTGCTACATGCCCACGAGTTGA 665 591 314 Antisense
CCCACGAGTTGATGCCCAACACGAT 21 259 327 Antisense
AACACGATGACACCCCGAATGAAAT 317 135 344 Antisense
Sequence Source Affymetrix Proprietary Database