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[177597_at]

Description F56C4.1 /REP_DB=WormBase Gene ID /WP=CE05959 /TR=Q20859 /GB=CAA94288.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 32      4grp_total > 27      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 67.9
(-3)
A 		104.4
(1.5)
A 		81.6
(-1.3)
A 		116.8
(3)
A 		49
B 82.5
(-1.8)
A 		104
(1.2)
A 		73.8
(-3)
A 		116.5
(3)
A 		43
C 93.9
(-0.5)
A 		101.8
(-0)
A 		52.8
(-3)
A 		151.4
(3)
A 		99
avr 81.4
(-1.8) 		103.4
(0.5) 		69.4
(-3) 		128.2
(3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 88
(0.6)
A 		83.2
(-0.1)
A 		104.8
(3)
A 		103.3
(2.8)
P 		84.4
(0.1)
A 		62.5
(-3)
A 		42
B 102.7
(0.7)
P 		115.8
(2)
A 		126.8
(3)
A 		102.9
(0.7)
A 		97.4
(0.2)
A 		63.9
(-3)
A 		63
C 111.2
(2.8)
A 		112.5
(3)
P 		106.6
(2.3)
A 		90.9
(0.5)
A 		61.2
(-3)
A 		64.8
(-2.6)
A 		51
avr 100.6
(1.5) 		103.8
(1.9) 		112.7
(3) 		99
(1.3) 		81
(-0.9) 		63.7
(-3) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 24.7
(3)
A 		22.7
(1.4)
A 		21.3
(0.3)
A 		17.1
(-3)
A 		8
B 26.3
(3)
A 		25.7
(2.6)
A 		17.1
(-3)
A 		24.8
(2)
A 		9
C 31.1
(3)
A 		29.3
(2.1)
A 		18.4
(-3)
A 		25.5
(0.4)
A 		13
avr 27.4
(3) 		25.9
(1.9) 		18.9
(-3) 		22.5
(-0.5) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 16.2
(-2.6)
A 		29.6
(3)
A 		22.8
(0.2)
A 		26.2
(1.6)
P 		25.5
(1.3)
A 		15.2
(-3)
A 		14
B 35.7
(1.5)
P 		38.5
(2.6)
A 		30.8
(-0.3)
A 		27.3
(-1.7)
A 		39.6
(3)
A 		23.8
(-3)
A 		16
C 41.2
(3)
A 		34.3
(1.2)
P 		27.1
(-0.7)
A 		18.3
(-3)
A 		19.8
(-2.6)
A 		21.7
(-2.1)
A 		23
avr 31
(1.7) 		34.1
(3) 		26.9
(-0.1) 		23.9
(-1.4) 		28.3
(0.5) 		20.2
(-3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177597_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9226
Sequence Type Exemplar sequence
Representative Public ID F56C4.1 NCBI
Target Description F56C4.1 /REP_DB=WormBase Gene ID /WP=CE05959 /TR=Q20859 /GB=CAA94288.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069564(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069564 NCBI Caenorhabditis elegans F56C4.1 (F56C4.1) mRNA, complete cds. 11/11 None
SNAP00000000592 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10637032:10638890:1 11/11 None
GENEFINDER00000000595 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10637032:10638890:1 11/11 None
F56C4.1 ENSEMBL cdna:known chromosome:CEL140:IV:10637032:10639181:1 gene:F56C4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10637037-10638896(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F56C4.1
Entrez Gene 186369 Entrez gene
SwissProt Q20859 EMBL-EBI
WormBase CE35557 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94288 Hypothetical protein F56C4.1 [Caenorhabditis elegans] ref|NP_501965.2| F56C4.1 [Caenorhabditis elegans] 1.0E-140
blast CAE60741 Hypothetical protein CBG04426 [Caenorhabditis briggsae] 5.0E-93
Sequence
Target Sequence 
>C. ELEGANS:177597_AT
gacatgggtacatacagctcacggggtcgagagtcgtcttgagaatatgttgctcaagtg
ggatgaacaatcgatctgcttcgatcgaccaaccacattgattctaaaaaaggcagcgga
cggaggaagcttctcggatttcatgaacaaattctcgtatctcgaggttccggagcattg
ggtagttcgaaaagatgaggatgatcttgaatcttggagggtgagtgggataaatgacga
aaatgcaattatttctattatgagtgggataagtttactcttttttttgttaaatgtttc
gtgcaatgtaaaaatcgatgaatgttctacaacaaatgatgtgacataccattgccctga
gtctgcttttaaagattcctgcacacaagcagatctcgaaaaatgctcagtacgaatgga
gatcaacagctcagaagatttttttacattttcacggcgtctgggacgaagtcatcttgt
tgcgacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACATGGGTACATACAGCTCACGGG 419 369 204 Antisense
ACAGCTCACGGGGTCGAGAGTCGTC 626 107 217 Antisense
TGGGATGAACAATCGATCTGCTTCG 635 553 262 Antisense
TCGATCGACCAACCACATTGATTCT 325 603 284 Antisense
GCAGCGGACGGAGGAAGCTTCTCGG 129 313 316 Antisense
GGAAGCTTCTCGGATTTCATGAACA 419 531 328 Antisense
AATTCTCGTATCTCGAGGTTCCGGA 274 173 353 Antisense
TGATGTGACATACCATTGCCCTGAG 10 567 540 Antisense
CATTGCCCTGAGTCTGCTTTTAAAG 522 217 553 Antisense
TACATTTTCACGGCGTCTGGGACGA 658 639 648 Antisense
GGGACGAAGTCATCTTGTTGCGACG 646 493 666 Antisense
Sequence Source Affymetrix Proprietary Database