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[177596_s_at]

Description F15D3.4 /REP_DB=WormBase Gene ID /WP=CE19795 /TR=Q9XVQ1 /GB=CAB02959.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 76      4grp_total > 43      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 3.1
(-3)
A 		12
(3)
A 		10.2
(1.8)
A 		4.7
(-1.9)
A 		9
B 4.3
(-2.8)
A 		39
(3)
A 		7.1
(-2.3)
A 		2.9
(-3)
A 		36
C 7.7
(-0)
A 		10.9
(2.2)
A 		3.4
(-3)
A 		12.1
(3)
A 		9
avr 5
(-3) 		20.6
(3) 		6.9
(-2.3) 		6.6
(-2.4) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 9.4
(-2.6)
A 		18.7
(-0.8)
A 		19.8
(-0.6)
A 		7.6
(-3)
A 		9.5
(-2.6)
A 		38.4
(3)
A 		31
B 6.1
(-2.5)
A 		8.9
(-1.4)
A 		8.6
(-1.5)
A 		19.4
(3)
A 		9.3
(-1.2)
A 		5
(-3)
A 		14
C 7.3
(-1.1)
A 		4
(-2.3)
A 		2
(-3)
A 		8.2
(-0.8)
A 		18.6
(3)
A 		14.4
(1.5)
A 		17
avr 7.6
(-3) 		10.5
(-1.5) 		10.1
(-1.7) 		11.7
(-0.9) 		12.5
(-0.5) 		19.3
(3) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1.1
(-1.8)
A 		2.6
(2.7)
A 		2.7
(3)
A 		0.7
(-3)
A 		2
B 1.4
(-2.5)
A 		9.6
(3)
A 		1.7
(-2.3)
A 		0.6
(-3)
A 		9
C 2.6
(1.4)
A 		3.1
(3)
A 		1.2
(-3)
A 		2
(-0.5)
A 		2
avr 1.7
(-2.1) 		5.1
(3) 		1.9
(-1.8) 		1.1
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 1.7
(-3)
A 		6.6
(0.8)
A 		4.3
(-1)
A 		1.9
(-2.8)
A 		2.9
(-2.1)
A 		9.4
(3)
A 		8
B 2.1
(-2.6)
A 		3
(-0.9)
A 		2.1
(-2.6)
A 		5.1
(3)
A 		3.8
(0.6)
A 		1.9
(-3)
A 		3
C 2.7
(-0.6)
A 		1.2
(-2.2)
A 		0.5
(-3)
A 		1.7
(-1.7)
A 		6
(3)
A 		4.8
(1.7)
A 		6
avr 2.2
(-3) 		3.6
(-0.4) 		2.3
(-2.8) 		2.9
(-1.7) 		4.2
(0.8) 		5.4
(3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177596_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.351
Sequence Type Exemplar sequence
Representative Public ID F15D3.4 NCBI
Target Description F15D3.4 /REP_DB=WormBase Gene ID /WP=CE19795 /TR=Q9XVQ1 /GB=CAB02959.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060549(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060549 NCBI Caenorhabditis elegans F15D3.4 (F15D3.4) mRNA, complete cds. 11/11 None
GENEFINDER00000000128 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11573363:11578709:1 11/11 None
SNAP00000000122 ENSEMBL cdna:SNAP chromosome:CEL140:I:11574265:11587602:1 11/11 None
F15D3.4 ENSEMBL cdna:known chromosome:CEL140:I:11573360:11578925:1 gene:F15D3.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11573293-11578856(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F15D3.4
Entrez Gene 173039 Entrez gene
SwissProt Q9XVQ1 EMBL-EBI
WormBase CE19795 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4867 serine-type endopeptidase inhibitor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02959 Hypothetical protein F15D3.4 [Caenorhabditis elegans] ref|NP_492950.1| F15D3.4 [Caenorhabditis elegans] 0.0
blast CAB02956 Hypothetical protein F15D3.7 [Caenorhabditis elegans] ref|NP_492953.1| F15D3.7 [Caenorhabditis elegans] 1.0E-126
blast CAB05519 Hypothetical protein F44G3.7 [Caenorhabditis elegans] ref|NP_507062.1| F44G3.7 [Caenorhabditis elegans] 1.0E-118
blast CAE69300 Hypothetical protein CBG15355 [Caenorhabditis briggsae] 1.0E-117
blast CAB05519 Hypothetical protein F44G3.7 [Caenorhabditis elegans] ref|NP_507062.1| F44G3.7 [Caenorhabditis elegans] 1.0E-112
blast CAE69268 Hypothetical protein CBG15321 [Caenorhabditis briggsae] 6.0E-94
Protein Domains
Database ID Description E-Value
Pfam IPR003397 EMBL-EBI Mitochondrial import inner membrane translocase, subunit Tim17/22 1.8E-37
Sequence
Target Sequence 
>C. ELEGANS:177596_S_AT
tcacgagaagatccagacctgcggcgactggcacaccaccttcgactcgcccgtcttcct
acccctatgcacaacctctacaccactttccctatacgcccacgcaaaagccagcgggct
ttcgagaatcttctccagcgaaaaatccgagcttctcgagatgaagagtattccggcacg
tggtggtgcacgtcaattctccacactttacgatcactatcacaagactgtgtttgaagt
tcatgggtctgatccgaaggttgaaaattttatgagaaaacgtcctcgtcgaatgtttga
tcaattctcgccggccagagctcatcagtgtgtggacgattcgatggcggagctgcatgg
gaagtatcagatgaaaaatccgacaaaggaattcaataataaaatgaatattaatccatt
gctcacctaccgcgagaaccacttgaaccacgatgagcccagcttcgagtggctccatga
gaatcacgaattcgatttgaaggatcctaaagcgctcatgttcaacaaaccattctacta
tgtgatgactcgagctttggtcggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCACGAGAAGATCCAGACCTGCGGC 203 627 1857 Antisense
ACGCCCACGCAAAAGCCAGCGGGCT 306 91 1952 Antisense
CAGCGGGCTTTCGAGAATCTTCTCC 392 203 1968 Antisense
GTGGTGGTGCACGTCAATTCTCCAC 7 487 2036 Antisense
ATTCTCCACACTTTACGATCACTAT 146 11 2052 Antisense
GAATGTTTGATCAATTCTCGCCGGC 13 331 2147 Antisense
CCGGCCAGAGCTCATCAGTGTGTGG 87 267 2167 Antisense
TGGACGATTCGATGGCGGAGCTGCA 535 547 2189 Antisense
GAATATTAATCCATTGCTCACCTAC 107 325 2262 Antisense
TGAGCCCAGCTTCGAGTGGCTCCAT 667 567 2310 Antisense
GTGATGACTCGAGCTTTGGTCGGAA 298 483 2398 Antisense
Sequence Source Affymetrix Proprietary Database