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[177595_at]

Description C06C3.9 /REP_DB=WormBase Gene ID /WP=CE00890 /TR=Q17716 /GB=CAA85316.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 52      4grp_high_8_8 > 49      6grp_total > 62      4grp_total > 61      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 52.8
(2.2)
P 		42.1
(1.1)
P 		59.8
(3)
P 		4.8
(-3)
A 		55
B 66.2
(3)
P 		56
(2)
P 		32.3
(-0.3)
P 		4.2
(-3)
A 		62
C 47.4
(-0.4)
P 		48.7
(0.3)
P 		53.8
(3)
P 		42.5
(-3)
P 		11
avr 55.5
(3) 		48.9
(2) 		48.6
(1.9) 		17.2
(-3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 191
1 2 3 4 5 6 range
A 3.8
(-3)
A 		56.5
(-1.3)
P 		195.1
(3)
P 		116.9
(0.5)
P 		95
(-0.1)
P 		52.7
(-1.5)
P 		191
B 43.4
(-2.9)
P 		85.6
(0.8)
P 		110.8
(3)
P 		99.2
(2)
P 		62.3
(-1.2)
P 		42.2
(-3)
P 		69
C 39.4
(-2.5)
P 		104.3
(1.5)
P 		129.3
(3)
P 		89.6
(0.6)
P 		58.5
(-1.3)
P 		30.5
(-3)
A 		99
avr 28.9
(-3) 		82.1
(-0.3) 		145.1
(3) 		101.9
(0.8) 		71.9
(-0.8) 		41.8
(-2.3) 		116
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 19.2
(3)
P 		9.1
(-0.3)
P 		15.6
(1.8)
P 		0.7
(-3)
A 		19
B 21.1
(3)
P 		13.8
(0.8)
P 		7.5
(-1)
P 		0.9
(-3)
A 		20
C 15.7
(1.4)
P 		14
(0.5)
P 		18.7
(3)
P 		7.2
(-3)
P 		12
avr 18.7
(3) 		12.3
(0.6) 		13.9
(1.2) 		2.9
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 0.7
(-3)
A 		20.1
(-0.2)
P 		42.5
(3)
P 		29.6
(1.1)
P 		28.7
(1)
P 		12.8
(-1.3)
P 		42
B 15.1
(-3)
P 		28.5
(3)
P 		26.9
(2.3)
P 		26.3
(2)
P 		25.3
(1.6)
P 		15.8
(-2.7)
P 		13
C 14.6
(-1.8)
P 		31.8
(2.7)
P 		32.9
(3)
P 		18
(-0.9)
P 		18.9
(-0.7)
P 		10.2
(-3)
A 		23
avr 10.1
(-3) 		26.8
(1.2) 		34.1
(3) 		24.6
(0.6) 		24.3
(0.6) 		12.9
(-2.3) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177595_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3142
Sequence Type Exemplar sequence
Representative Public ID C06C3.9 NCBI
Target Description C06C3.9 /REP_DB=WormBase Gene ID /WP=CE00890 /TR=Q17716 /GB=CAA85316.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000008818 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9376367:9379534:1 10/11 None
C06C3.9 ENSEMBL cdna:pseudogene chromosome:CEL140:II:9376133:9379140:1 gene:C06C3.9 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9376129-9379137(+) 96.81 100.0
Public Domain and Genome References
Ensembl C06C3.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T19004 hypothetical protein C06C3.9 - Caenorhabditis elegans 1.0E-167
blast CAA85317 Hypothetical protein C06C3.4 [Caenorhabditis elegans] ref|NP_495996.2| C06C3.4 [Caenorhabditis elegans] 1.0E-114
blast CAE65947 Hypothetical protein CBG11124 [Caenorhabditis briggsae] 6.0E-97
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.5E-10
Sequence
Target Sequence 
>C. ELEGANS:177595_AT
gaaaactgactttcttacggtatcaatgcgtgcacttccaccggaaattattacgaaaat
tacgaataaactagatccaatagaccgccttatagctcggagggtttcacgaaaaattcg
ggctattattgattaccaagtatttcaaatttccacaattagtatgaaaataggcgacaa
aaaatcgacgttaaaaattgatgccagtacgatagaatatctccctgttggtgatgattg
tcttgccaaatatggaagtcatgagaagaaagttgttggaaaaagtcatctagatattat
tcttaatgacttctcgacattggtgtctaatctgaaattccgtctggaggaattcacatt
tctactcggcagtttttggataagtgaagttcgaacaaactgctgtaattatttgaaaaa
tatcctacgaacctggcgaaatcaaaatactaaaatagtatctatgaatagtatttcgat
taatcaagtgattccgattttatcgcagttcaacgcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAACTGACTTTCTTACGGTATCA 593 353 681 Antisense
TACGGTATCAATGCGTGCACTTCCA 593 647 696 Antisense
GCGTGCACTTCCACCGGAAATTATT 586 291 708 Antisense
AGATCCAATAGACCGCCTTATAGCT 237 61 753 Antisense
GCCTTATAGCTCGGAGGGTTTCACG 691 279 767 Antisense
GAATATCTCCCTGTTGGTGATGATT 101 327 895 Antisense
GACTTCTCGACATTGGTGTCTAATC 10 373 988 Antisense
GTGTCTAATCTGAAATTCCGTCTGG 45 485 1003 Antisense
AATTCACATTTCTACTCGGCAGTTT 41 177 1031 Antisense
AATATCCTACGAACCTGGCGAAATC 183 173 1099 Antisense
CCGATTTTATCGCAGTTCAACGCAG 216 265 1174 Antisense
Sequence Source Affymetrix Proprietary Database