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[177594_at]

Description F49C5.5 /REP_DB=WormBase Gene ID /WP=CE16082 /TR=O17882 /GB=CAB04436.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 7.9
(-2)
A 		2.3
(-3)
A 		4.2
(-2.7)
A 		37.6
(3)
P 		35
B 3.2
(-3)
A 		6.9
(-0.4)
A 		5
(-1.7)
A 		11.7
(3)
A 		9
C 2.3
(-3)
A 		4.1
(-2.1)
A 		3.9
(-2.2)
A 		14.9
(3)
A 		13
avr 4.5
(-3) 		4.4
(-3) 		4.4
(-3) 		21.4
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 5.1
(-2.7)
A 		28.2
(2.9)
A 		9.1
(-1.7)
A 		21
(1.2)
A 		28.5
(3)
A 		3.7
(-3)
A 		25
B 6
(-1.9)
A 		14.3
(0.6)
A 		4.6
(-2.4)
A 		2.5
(-3)
A 		22.3
(3)
A 		3.1
(-2.8)
A 		20
C 2.3
(-3)
A 		10
(-1.5)
A 		34
(3)
A 		16.5
(-0.3)
A 		5.9
(-2.3)
A 		3.3
(-2.8)
A 		32
avr 4.5
(-2.6) 		17.5
(2.5) 		15.9
(1.8) 		13.3
(0.8) 		18.9
(3) 		3.4
(-3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 2.9
(-0.1)
A 		0.5
(-3)
A 		1.1
(-2.3)
A 		5.5
(3)
P 		5
B 1
(-3)
A 		1.7
(-0.2)
A 		1.2
(-2.2)
A 		2.5
(3)
A 		2
C 0.8
(-3)
A 		1.2
(-1.6)
A 		1.4
(-0.9)
A 		2.5
(3)
A 		2
avr 1.6
(-1.8) 		1.1
(-3) 		1.2
(-2.8) 		3.5
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.9
(-3)
A 		10
(3)
A 		2
(-2.3)
A 		5.3
(-0.1)
A 		8.6
(2.1)
A 		0.9
(-3)
A 		9
B 2.1
(-2)
A 		4.7
(-0.1)
A 		1.1
(-2.7)
A 		0.7
(-3)
A 		9.1
(3)
A 		1.2
(-2.6)
A 		8
C 0.8
(-3)
A 		3.1
(-1.3)
A 		8.7
(3)
A 		3.3
(-1.1)
A 		1.9
(-2.2)
A 		1.1
(-2.8)
A 		8
avr 1.3
(-2.8) 		5.9
(2.3) 		3.9
(0.1) 		3.1
(-0.8) 		6.5
(3) 		1.1
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177594_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3116
Sequence Type Exemplar sequence
Representative Public ID F49C5.5 NCBI
Target Description F49C5.5 /REP_DB=WormBase Gene ID /WP=CE16082 /TR=O17882 /GB=CAB04436.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064279(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064279 NCBI Caenorhabditis elegans F49C5.5 (F49C5.5) mRNA, complete cds. 11/11 None
F49C5.5 ENSEMBL cdna:known chromosome:CEL140:II:12545933:12546416:-1 gene:F49C5.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12545929-12546413(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F49C5.5
Entrez Gene 186016 Entrez gene
SwissProt O17882 EMBL-EBI
WormBase CE16082 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04436 Hypothetical protein F49C5.5 [Caenorhabditis elegans] ref|NP_496680.1| F49C5.5 [Caenorhabditis elegans] 8.0E-76
Sequence
Target Sequence 
>C. ELEGANS:177594_AT
tgcattgtgtagtcggagttttgatttgtgtaacaaagtatcattttggagataattttg
aaaatttgcattggttgagcttaccgcacactcatagtggacgagcagacctcgatcgat
gtcacctatgcattcgagatgatctaccctttctgtttgatatttctccatttagaatat
ggtttatcagttatccccctttttgtgcattgtgttatctttcaaatcaaaaattcagat
cttacaattctgatagctcgaaaccttattgccaagctagaattcttgttgaaaaaagaa
accaattggaaaatatgagttgtagcagaacaggcggcgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCATTGTGTAGTCGGAGTTTTGAT 252 573 14 Antisense
TGCATTGGTTGAGCTTACCGCACAC 274 579 80 Antisense
TACCGCACACTCATAGTGGACGAGC 640 649 95 Antisense
GTGGACGAGCAGACCTCGATCGATG 537 489 110 Antisense
GCATTCGAGATGATCTACCCTTTCT 652 307 143 Antisense
TACCCTTTCTGTTTGATATTTCTCC 602 649 158 Antisense
ATATGGTTTATCAGTTATCCCCCTT 647 19 190 Antisense
TCCCCCTTTTTGTGCATTGTGTTAT 487 597 207 Antisense
AGATCTTACAATTCTGATAGCTCGA 573 65 250 Antisense
GATAGCTCGAAACCTTATTGCCAAG 253 425 265 Antisense
GAGTTGTAGCAGAACAGGCGGCGGA 663 395 330 Antisense
Sequence Source Affymetrix Proprietary Database