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[177593_at]

Description K05D4.3 /REP_DB=WormBase Gene ID /WP=CE16229 /TR=O17926 /GB=CAB07253.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 31      4grp_total > 25      6grp_cgc > 72      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 6.1
(-3)
A 		10.2
(-2.5)
A 		55.9
(3)
A 		53.8
(2.7)
P 		50
B 14.9
(-3)
A 		61.2
(3)
A 		16
(-2.9)
A 		20.7
(-2.2)
A 		46
C 27.7
(0.5)
A 		25
(0.1)
A 		5.4
(-3)
A 		43.4
(3)
P 		38
avr 16.2
(-3) 		32.1
(1.1) 		25.8
(-0.5) 		39.3
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 11.5
(-1.5)
A 		13.5
(-1.1)
A 		35
(3)
A 		26.7
(1.4)
A 		16.9
(-0.5)
A 		3.7
(-3)
A 		31
B 21
(0.5)
A 		31.8
(2.7)
A 		33.3
(3)
A 		11.5
(-1.4)
A 		9
(-2)
A 		3.9
(-3)
A 		29
C 1.9
(-2.8)
A 		20.2
(3)
A 		4.8
(-1.9)
A 		10.4
(-0.1)
A 		1.4
(-3)
A 		3.1
(-2.5)
A 		19
avr 11.5
(-0.7) 		21.8
(2.3) 		24.4
(3) 		16.2
(0.6) 		9.1
(-1.4) 		3.6
(-3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 2.2
(-3)
A 		2.2
(-3)
A 		14.6
(3)
A 		7.9
(-0.2)
P 		12
B 4.7
(-2.5)
A 		15.1
(3)
A 		3.7
(-3)
A 		4.4
(-2.6)
A 		11
C 9.2
(3)
A 		7.2
(1.4)
A 		1.9
(-3)
A 		7.3
(1.4)
P 		7
avr 5.4
(-3) 		8.2
(3) 		6.7
(-0.2) 		6.5
(-0.6) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 2.1
(-1.9)
A 		4.8
(0.5)
A 		7.6
(3)
A 		6.8
(2.3)
A 		5.1
(0.8)
A 		0.9
(-3)
A 		7
B 7.3
(0.8)
A 		10.6
(3)
A 		8.1
(1.4)
A 		3
(-2)
A 		3.6
(-1.6)
A 		1.5
(-3)
A 		9
C 0.7
(-2.8)
A 		6.1
(3)
A 		1.2
(-2.3)
A 		2.1
(-1.3)
A 		0.5
(-3)
A 		1
(-2.5)
A 		6
avr 3.4
(-0.7) 		7.2
(3) 		5.6
(1.4) 		4
(-0.1) 		3.1
(-1) 		1.1
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177593_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13163
Sequence Type Exemplar sequence
Representative Public ID K05D4.3 NCBI
Target Description K05D4.3 /REP_DB=WormBase Gene ID /WP=CE16229 /TR=O17926 /GB=CAB07253.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074677, NM_001028859
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000023581 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16183233:16187306:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_074677 5/11 Cross Hyb Matching Probes None
NM_001028859 5/11 Cross Hyb Matching Probes None
K05D4.8 5/11 Cross Hyb Matching Probes None
K05D4.3 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16185673-16187306(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07252 Hypothetical protein K05D4.2 [Caenorhabditis elegans] ref|NP_507077.1| Seven TM Receptor family member (str-106) [Caenorhabditis elegans] 0.0
blast CAD89722 Hypothetical protein K05D4.8 [Caenorhabditis elegans] ref|NP_001024030.1| Serpentine Receptor, class Z family member (srz-13) [Caenorhabditis elegans] 1.0E-109
blast CAB07350 Hypothetical protein F10A3.15 [Caenorhabditis elegans] ref|NP_507075.2| Seven TM Receptor family member (str-111) [Caenorhabditis elegans] 9.0E-99
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 3.3E-18
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.3E-25
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 1.5E-16
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 4.0E-11
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000023581 15 10-32,45-64,93-115,135-157,205-227,255-277,287-309,348-370,375-392,405-427,442-464,486-508,548-570,586-608,618-635
Sequence
Target Sequence 
>C. ELEGANS:177593_AT
aactgcacaaactccaaaaccacataatgtgccagtttctgttgataattgcttcaaaat
tcatatatattccgatattccttttcaatggagattggtttgccgtcaacgaagcgttgg
acggttacatttctatttttctgattcaagcttcatatttggtttgcaaccacaggaatt
tgaaaacgttttttgactcgatagactcccgaaatttttcctacatttcaatgcatttgt
ttttgttgatttctgcactaacatacattcttttaatattgaatatttggaaaaaatcaa
agcatttaacatccgctaaactgaacaaaccccaaaactatataatgtgccagtttctgt
tgataattgcttcaaagttcataaatattccaattttcttttttaatcgagattggtttg
ctttcaacgaagggctggacggttacatttctatttttctgattcaagtttcatatttgg
tttgcaaccacagaaatttgcaattgtttttagactcgttaaaatcccgaaatgtgttca
aacttttttgttgtccattttccaaaagctcccaagttggtgttgttgcacagccggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTGCACAAACTCCAAAACCACAT 241 143 101 Antisense
ATATTCCGATATTCCTTTTCAATGG 423 19 167 Antisense
GGAGATTGGTTTGCCGTCAACGAAG 183 517 190 Antisense
AGCGTTGGACGGTTACATTTCTATT 615 81 213 Antisense
CGTTTTTTGACTCGATAGACTCCCG 322 247 287 Antisense
TAGACTCCCGAAATTTTTCCTACAT 53 651 302 Antisense
GATTTCTGCACTAACATACATTCTT 432 427 348 Antisense
CATCCGCTAAACTGAACAAACCCCA 694 85 410 Antisense
AGGGCTGGACGGTTACATTTCTATT 302 59 531 Antisense
TTGTCCATTTTCCAAAAGCTCCCAA 530 703 651 Antisense
AAGTTGGTGTTGTTGCACAGCCGGT 666 155 674 Antisense
Sequence Source Affymetrix Proprietary Database