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[177592_at]

Description F55C5.4 /REP_DB=WormBase Gene ID /WP=CE11156 /TR=Q20818 /GB=CAB01569.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 77      4grp_highest_8_8 > 25      4grp_high_8_8 > 59      6grp_highest_nonorm > 93      6grp_total > 78      4grp_total > 60      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 193
1 2 3 4 range
A 270.3
(1)
P 		288.6
(1.8)
P 		314.8
(3)
P 		181
(-3)
P 		134
B 311.3
(3)
P 		211.5
(-0.9)
P 		245.7
(0.4)
P 		158.8
(-3)
P 		153
C 242.9
(0.9)
P 		249.7
(1.1)
P 		308.1
(3)
P 		121.8
(-3)
P 		186
avr 274.8
(2.3) 		249.9
(1.2) 		289.5
(3) 		153.9
(-3) 		136

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 660
1 2 3 4 5 6 range
A 369.2
(-1.5)
P 		258.8
(-3)
P 		257.6
(-3)
P 		312.4
(-2.2)
P 		464.2
(-0.1)
P 		690.2
(3)
P 		433
B 345.1
(-2.1)
P 		323.6
(-2.3)
P 		248.1
(-3)
P 		297.9
(-2.5)
P 		432.8
(-1.2)
P 		871.9
(3)
P 		624
C 212.1
(-3)
P 		334.3
(-1.6)
P 		254.3
(-2.5)
P 		334.8
(-1.6)
P 		362.7
(-1.3)
P 		750.2
(3)
P 		538
avr 308.8
(-2.4) 		305.6
(-2.4) 		253.3
(-3) 		315
(-2.3) 		419.9
(-1.1) 		770.8
(3) 		518
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 98.4
(3)
P 		62.6
(0)
P 		82.3
(1.7)
P 		26.5
(-3)
P 		72
B 99.3
(3)
P 		52.2
(-1.3)
P 		56.9
(-0.9)
P 		33.8
(-3)
P 		66
C 80.4
(1.1)
P 		71.8
(0.5)
P 		107.4
(3)
P 		20.5
(-3)
P 		87
avr 92.7
(3) 		62.2
(0.2) 		82.2
(2) 		26.9
(-3) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 269
1 2 3 4 5 6 range
A 68.1
(-2.4)
P 		92
(-1.1)
P 		56.1
(-3)
P 		79.2
(-1.8)
P 		140.1
(1.5)
P 		168.1
(3)
P 		112
B 120.1
(-1.6)
P 		107.7
(-1.9)
P 		60.3
(-3)
P 		78.9
(-2.6)
P 		175.8
(-0.4)
P 		325.1
(3)
P 		265
C 78.6
(-2.6)
P 		102
(-1.8)
P 		64.7
(-3)
P 		67.3
(-2.9)
P 		117.4
(-1.3)
P 		251.1
(3)
P 		186
avr 88.9
(-2.1) 		100.6
(-1.7) 		60.4
(-3) 		75.1
(-2.5) 		144.4
(-0.3) 		248.1
(3) 		188
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177592_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14476
Sequence Type Exemplar sequence
Representative Public ID F55C5.4 NCBI
Target Description F55C5.4 /REP_DB=WormBase Gene ID /WP=CE11156 /TR=Q20818 /GB=CAB01569.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073679(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073679 NCBI Caenorhabditis elegans F55C5.4 (F55C5.4) mRNA, complete cds. 11/11 None
SNAP00000005346 ENSEMBL cdna:SNAP chromosome:CEL140:V:12274472:12278096:1 11/11 None
GENEFINDER00000005355 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12274472:12278096:1 11/11 None
F55C5.4 ENSEMBL cdna:known chromosome:CEL140:V:12274472:12278251:1 gene:F55C5.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12274471-12278096(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F55C5.4
Entrez Gene 179684 Entrez gene
SwissProt Q20818 EMBL-EBI
WormBase CE11156 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01569 Hypothetical protein F55C5.4 [Caenorhabditis elegans] ref|NP_506080.1| F55C5.4 [Caenorhabditis elegans] 0.0
blast CAE75436 Hypothetical protein CBG23429 [Caenorhabditis briggsae] 0.0
blast XP_788126 PREDICTED: similar to leucine zipper protein 5 [Strongylocentrotus purpuratus] 1.0E-18
Sequence
Target Sequence 
>C. ELEGANS:177592_AT
gcacttcttctcagatttattccaaaatggatgaataagcaatgtgatttgatggaagat
gatgaagagaacatttttaaaaatcatcgagaaattgtggaatctttacgccaatttcac
aagagagtttctgaaactgattattgggacgaagattcagctaaacgtatgatgcatcac
tttatgttattctcaattgtatcagcttcttcgaaaaatgacgacgaggcatatgatgat
ccacgcgatgaagattataaaccaccacacttcatttctcttgcactaatcaagttcatt
ctcaaagaaaaatcgctaactgaagacattattgaagaaatatcaaccaattatattccc
gaagacagcaagtattttacggcagaagaaggtgaactgaaaactgatgaaaaactgtct
aaactagcagcactgtcacaacttctacgaattctcgaacgatattcaaaattccatgga
aagctaatcaaagaagccatcgacaaatgcactacaagagtgctggattgcttcgcgaat
gcctcagatctgaatactgtagcccatcacattttgaacagtctttcttctcttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCACTTCTTCTCAGATTTATTCCAA 329 317 2416 Antisense
GTGGAATCTTTACGCCAATTTCACA 415 491 2512 Antisense
TTCTCAATTGTATCAGCTTCTTCGA 658 691 2605 Antisense
GACGAGGCATATGATGATCCACGCG 146 379 2638 Antisense
TTATAAACCACCACACTTCATTTCT 510 667 2670 Antisense
ACTTCATTTCTCTTGCACTAATCAA 446 103 2684 Antisense
CTAGCAGCACTGTCACAACTTCTAC 317 225 2839 Antisense
AAGAGTGCTGGATTGCTTCGCGAAT 528 153 2931 Antisense
CTTCGCGAATGCCTCAGATCTGAAT 114 221 2946 Antisense
GATCTGAATACTGTAGCCCATCACA 39 419 2962 Antisense
TTTTGAACAGTCTTTCTTCTCTTCT 595 677 2987 Antisense
Sequence Source Affymetrix Proprietary Database