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[177591_at]

Description C16D6.1 /REP_DB=WormBase Gene ID /WP=CE08230 /TR=O62063 /GB=CAB03889.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 01      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 159
1 2 3 4 range
A 51.4
(-2.6)
A 		41.7
(-3)
A 		80.5
(-1.4)
M 		188.6
(3)
P 		147
B 50.3
(-3)
A 		70.8
(-1.4)
A 		51.9
(-2.9)
A 		129.1
(3)
P 		79
C 55.7
(-1.2)
A 		29.2
(-3)
A 		38.7
(-2.4)
A 		117.4
(3)
P 		88
avr 52.5
(-2.7) 		47.2
(-3) 		57
(-2.4) 		145
(3) 		98

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 71
(3)
A 		62
(2.2)
A 		67
(2.6)
A 		25.9
(-1.2)
A 		50.2
(1)
A 		7.3
(-3)
A 		64
B 35.1
(1.4)
A 		40.1
(2)
A 		3.9
(-2.8)
A 		2.5
(-3)
A 		47.3
(3)
A 		23.8
(-0.1)
A 		45
C 34.9
(-0.1)
A 		47
(1.3)
A 		39.6
(0.5)
A 		37.1
(0.2)
A 		61.9
(3)
A 		9.1
(-3)
A 		53
avr 47
(2.1) 		49.7
(2.5) 		36.8
(0.5) 		21.8
(-1.7) 		53.1
(3) 		13.4
(-3) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 18.7
(0.1)
A 		9.1
(-3)
A 		21
(0.9)
M 		27.6
(3)
P 		19
B 16
(-1.5)
A 		17.5
(-0.9)
A 		12
(-3)
A 		27.5
(3)
P 		16
C 18.4
(2.3)
A 		8.4
(-3)
A 		13.5
(-0.3)
A 		19.8
(3)
P 		11
avr 17.7
(-0.3) 		11.7
(-3) 		15.5
(-1.3) 		25
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 13.1
(0.4)
A 		22
(3)
A 		14.6
(0.8)
A 		6.6
(-1.6)
A 		15.2
(1)
A 		1.8
(-3)
A 		20
B 12.2
(0.7)
A 		13.3
(1.1)
A 		0.9
(-2.9)
A 		0.7
(-3)
A 		19.2
(3)
A 		8.9
(-0.3)
A 		19
C 12.9
(0.5)
A 		14.3
(1)
A 		10.1
(-0.5)
A 		7.5
(-1.4)
A 		20
(3)
A 		3
(-3)
A 		17
avr 12.7
(0.6) 		16.5
(2.3) 		8.5
(-1.3) 		4.9
(-2.9) 		18.1
(3) 		4.6
(-3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177591_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16710
Sequence Type Exemplar sequence
Representative Public ID C16D6.1 NCBI
Target Description C16D6.1 /REP_DB=WormBase Gene ID /WP=CE08230 /TR=O62063 /GB=CAB03889.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077698(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077698 NCBI Caenorhabditis elegans C16D6.1 (C16D6.1) mRNA, complete cds. 11/11 None
GENEFINDER00000035347 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12520681:12526141:-1 11/11 None
C16D6.1 ENSEMBL cdna:known chromosome:CEL140:X:12525306:12526141:-1 gene:C16D6.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000035343 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12525305-12526141(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C16D6.1
Entrez Gene 182683 Entrez gene
SwissProt O62063 EMBL-EBI
WormBase CE08230 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03889 Hypothetical protein C16D6.1 [Caenorhabditis elegans] ref|NP_510099.1| C16D6.1 [Caenorhabditis elegans] 1.0E-32
blast CAB03889 Hypothetical protein C16D6.1 [Caenorhabditis elegans] ref|NP_510099.1| C16D6.1 [Caenorhabditis elegans] 3.0E-32
Protein Domains
Database ID Description E-Value
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 1.4E-6
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 1.6E-8
Sequence
Target Sequence 
>C. ELEGANS:177591_AT
caaaaccttctggcatgttcacgtaaagatccaaataataataggaatgttcttgaggtt
cggtaccaaaacaaagattccgaaaccggaaaattcgttacacttatcaacctgcaatct
gtgataccatatccgccttatagacataacacaatgtggtttaatggaggaccaccggga
ccacctccacatggtcctccgccacctcatcttcttcacgcacttccacatccagcatac
ccgccgggtcatccacttcacatgccaggaatgacaatgatgcccatgggtccagtgggt
ccgccgatgatggcagggatgcctatgagaccgatgccaccacttccgccaatgacacca
atgggttcgatgccacatccaaatgatggtggtccgcatccgatgatgcttcctggcgcg
ccgatgactcaacagcgtcagaggcctggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAAACCTTCTGGCATGTTCACGTA 96 189 46 Antisense
GGAATGTTCTTGAGGTTCGGTACCA 165 1 89 Antisense
GTTACACTTATCAACCTGCAATCTG 44 447 142 Antisense
TGATACCATATCCGCCTTATAGACA 410 563 167 Antisense
TCATCCACTTCACATGCCAGGAATG 28 623 294 Antisense
TGATGCCCATGGGTCCAGTGGGTCC 611 563 323 Antisense
GGGTCCGCCGATGATGGCAGGGATG 412 497 342 Antisense
AGGGATGCCTATGAGACCGATGCCA 647 57 360 Antisense
GACACCAATGGGTTCGATGCCACAT 632 367 399 Antisense
ATGATGGTGGTCCGCATCCGATGAT 207 47 428 Antisense
GACTCAACAGCGTCAGAGGCCTGGT 524 369 471 Antisense
Sequence Source Affymetrix Proprietary Database