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[177590_at]

Description W05H5.1 /REP_DB=WormBase Gene ID /WP=CE14636 /TR=Q9XVG1 /GB=CAB03477.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 0      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 6.1
(-2.9)
A 		18.7
(-0.6)
A 		5.4
(-3)
A 		38.3
(3)
A 		33
B 5.1
(-3)
A 		5.3
(-2.9)
A 		16.3
(3)
A 		11.4
(0.4)
A 		11
C 26.6
(1.7)
A 		2.5
(-3)
A 		28.7
(2.1)
A 		33.2
(3)
A 		31
avr 12.6
(-1.8) 		8.8
(-3) 		16.8
(-0.4) 		27.6
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 40.7
(1.8)
A 		5.6
(-3)
A 		21.2
(-0.9)
A 		49.7
(3)
A 		31.5
(0.5)
A 		9.8
(-2.4)
A 		44
B 25.8
(-1.5)
A 		27.6
(-1.4)
A 		36.4
(-0.4)
A 		68.7
(3)
A 		12.1
(-3)
A 		14.3
(-2.8)
A 		57
C 12
(-1.8)
A 		3.3
(-3)
A 		29.2
(0.4)
A 		48.4
(3)
A 		26.5
(0.1)
A 		36.5
(1.4)
A 		45
avr 26.2
(-1.1) 		12.2
(-3) 		28.9
(-0.7) 		55.6
(3) 		23.4
(-1.5) 		20.2
(-1.9) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 2.2
(-1.9)
A 		4.1
(0.9)
A 		1.4
(-3)
A 		5.6
(3)
A 		4
B 1.6
(-2.3)
A 		1.3
(-3)
A 		3.8
(3)
A 		2.4
(-0.4)
A 		3
C 8.8
(2.2)
A 		0.7
(-3)
A 		10
(3)
A 		5.6
(0.2)
A 		9
avr 4.2
(1.3) 		2
(-3) 		5.1
(3) 		4.5
(1.8) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 7.5
(0.1)
A 		2
(-3)
A 		4.6
(-1.5)
A 		12.6
(3)
A 		9.5
(1.2)
A 		2.4
(-2.8)
A 		11
B 9
(-1.2)
A 		9.2
(-1.1)
A 		8.8
(-1.2)
A 		18.2
(3)
A 		4.9
(-3)
A 		5.3
(-2.8)
A 		13
C 4.4
(-1.2)
A 		1
(-3)
A 		7.4
(0.4)
A 		9.7
(1.7)
A 		8.6
(1.1)
A 		12.2
(3)
A 		11
avr 7
(-1.1) 		4.1
(-3) 		6.9
(-1.2) 		13.5
(3) 		7.7
(-0.7) 		6.6
(-1.4) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177590_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3181
Sequence Type Exemplar sequence
Representative Public ID W05H5.1 NCBI
Target Description W05H5.1 /REP_DB=WormBase Gene ID /WP=CE14636 /TR=Q9XVG1 /GB=CAB03477.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064244(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064244 NCBI Caenorhabditis elegans W05H5.1 (W05H5.1) mRNA, complete cds. 11/11 None
GENEFINDER00000019755 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12442297:12444682:-1 9/11 None
W05H5.1 ENSEMBL cdna:known chromosome:CEL140:II:12442433:12445172:-1 gene:W05H5.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000019744 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12442429-12445169(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W05H5.1
Entrez Gene 189222 Entrez gene
SwissProt Q9XVG1 EMBL-EBI
WormBase CE14636 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03477 Hypothetical protein W05H5.1 [Caenorhabditis elegans] ref|NP_496645.1| W05H5.1 [Caenorhabditis elegans] 1.0E-168
blast CAB03477 Hypothetical protein W05H5.1 [Caenorhabditis elegans] ref|NP_496645.1| W05H5.1 [Caenorhabditis elegans] 1.0E-117
blast CAA19552 Hypothetical protein Y57A10C.10 [Caenorhabditis elegans] ref|NP_496643.1| Y57A10C.10 [Caenorhabditis elegans] 2.0E-74
blast CAE73509 Hypothetical protein CBG20967 [Caenorhabditis briggsae] 6.0E-72
blast CAA19552 Hypothetical protein Y57A10C.10 [Caenorhabditis elegans] ref|NP_496643.1| Y57A10C.10 [Caenorhabditis elegans] 1.0E-50
blast CAE73509 Hypothetical protein CBG20967 [Caenorhabditis briggsae] 3.0E-46
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496645.1 5 54-73,85-107,122-144,176-198,218-240
W05H5.1 5 54-73,85-107,122-144,176-198,218-240
GENEFINDER00000019755 7 15-32,44-66,81-103,126-148,168-190,229-251,305-327
Sequence
Target Sequence 
>C. ELEGANS:177590_AT
gacggttaccgatattgttttcgcggtttccatactaccgcaaataatctacatgctgat
ttattgggagatgaccggtatcaactatgatccattattcatggcgatcgccggagcccc
gttacccatgtttttgaaagtttcctcagttttaaatgcgggagcagcaaccgagagaat
attggtaagggttatgcccgacacttcccgggccctatattttccaatcgtgtaccgaaa
aatttgccatataaagtactccaactacttgatggcgctcagctttctacttggctcaat
tgacacttgcctggggatttataattttaaactcgaaaaccgcgtgaattgctcctcgat
cggctgctttgttaatgatagtttcagaacctactggggagcttcgaatatgatctgtgg
agtggttattatagcgataagtttgtttgtgtttgggaaagttcggaaacttgggaaaag
caatgcatggactggtaaaaccgttgtggaaaggcaaatgaataagaaaacgcctcgact
cccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGGTTACCGATATTGTTTTCGCG 557 375 279 Antisense
TGTTTTCGCGGTTTCCATACTACCG 495 561 294 Antisense
GATCCATTATTCATGGCGATCGCCG 67 417 367 Antisense
GAAAGTTTCCTCAGTTTTAAATGCG 385 355 414 Antisense
TGGTAAGGGTTATGCCCGACACTTC 600 545 461 Antisense
GTACTCCAACTACTTGATGGCGCTC 576 459 534 Antisense
TACTTGATGGCGCTCAGCTTTCTAC 293 645 544 Antisense
CTTGGCTCAATTGACACTTGCCTGG 650 217 568 Antisense
CGAAAACCGCGTGAATTGCTCCTCG 357 251 612 Antisense
TCCTCGATCGGCTGCTTTGTTAATG 26 593 631 Antisense
GAATAAGAAAACGCCTCGACTCCCG 626 169 798 Antisense
Sequence Source Affymetrix Proprietary Database