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[177589_at]

Description T27C5.7 /REP_DB=WormBase Gene ID /WP=CE16501 /TR=O45851 /GB=CAB04868.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 71      4grp_total > 41      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 14.5
(-3)
A 		65.7
(3)
A 		51.7
(1.4)
A 		61.5
(2.5)
A 		51
B 14.5
(-3)
A 		58.2
(3)
A 		52
(2.1)
M 		49.1
(1.8)
P 		44
C 40.8
(-2.4)
A 		71.4
(3)
P 		56.4
(0.4)
A 		37.3
(-3)
P 		34
avr 23.3
(-3) 		65.1
(3) 		53.4
(1.3) 		49.3
(0.7) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 3.3
(-3)
A 		36.6
(-0.6)
P 		48.2
(0.3)
P 		86
(3)
P 		32.8
(-0.9)
A 		32.8
(-0.9)
A 		83
B 1.2
(-3)
A 		43.4
(0)
P 		85.5
(3)
P 		52.7
(0.7)
P 		33.4
(-0.7)
A 		22.1
(-1.5)
A 		84
C 8
(-3)
A 		58.3
(0.5)
P 		50.6
(-0)
P 		93.6
(3)
P 		48.4
(-0.2)
A 		20.5
(-2.1)
A 		86
avr 4.2
(-3) 		46.1
(0.4) 		61.4
(1.7) 		77.4
(3) 		38.2
(-0.2) 		25.1
(-1.3) 		73
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 5.3
(-3)
A 		14.3
(3)
A 		13.5
(2.5)
A 		9
(-0.5)
A 		9
B 4.6
(-3)
A 		14.4
(3)
A 		12
(1.5)
M 		10.5
(0.6)
P 		10
C 13.5
(0)
A 		20.5
(3)
P 		19.6
(2.6)
A 		6.3
(-3)
P 		14
avr 7.8
(-3) 		16.4
(3) 		15
(2) 		8.6
(-2.4) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 0.6
(-3)
A 		13
(0.5)
P 		10.5
(-0.2)
P 		21.8
(3)
P 		9.9
(-0.4)
A 		8
(-0.9)
A 		21
B 0.4
(-3)
A 		14.4
(1.1)
P 		20.8
(3)
P 		13.9
(1)
P 		13.6
(0.9)
A 		8.2
(-0.7)
A 		20
C 3
(-3)
A 		17.8
(2.6)
P 		12.9
(0.8)
P 		18.8
(3)
P 		15.7
(1.8)
A 		6.9
(-1.5)
A 		16
avr 1.3
(-3) 		15.1
(1.9) 		14.7
(1.8) 		18.2
(3) 		13.1
(1.2) 		7.7
(-0.7) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177589_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14479
Sequence Type Exemplar sequence
Representative Public ID T27C5.7 NCBI
Target Description T27C5.7 /REP_DB=WormBase Gene ID /WP=CE16501 /TR=O45851 /GB=CAB04868.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028994(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028994 NCBI Caenorhabditis elegans T27C5.12 (T27C5.12) mRNA, complete cds. 11/11 None
GENEFINDER00000030305 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17417855:17419391:1 11/11 None
T27C5.12 ENSEMBL cdna:known chromosome:CEL140:V:17417855:17419320:1 gene:T27C5.12 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000030296 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17416122-17419320(+) 95.57 100.0
Public Domain and Genome References
Gene Title
Ensembl T27C5.12
Entrez Gene 3564801 Entrez gene
SwissProt Q5FC32 EMBL-EBI
WormBase CE37930 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAI46585 Hypothetical protein T27C5.12 [Caenorhabditis elegans] ref|NP_001024165.1| T27C5.12 [Caenorhabditis elegans] 1.0E-175
blast CAI46585 Hypothetical protein T27C5.12 [Caenorhabditis elegans] ref|NP_001024165.1| T27C5.12 [Caenorhabditis elegans] 1.0E-165
blast CAB04492 Hypothetical protein F56H6.4 [Caenorhabditis elegans] ref|NP_493105.1| F56H6.4 [Caenorhabditis elegans] 1.0E-81
blast CAB04492 Hypothetical protein F56H6.4 [Caenorhabditis elegans] ref|NP_493105.1| F56H6.4 [Caenorhabditis elegans] 6.0E-77
blast AAB96709 Hypothetical protein F49D11.3 [Caenorhabditis elegans] ref|NP_492846.1| F49D11.3 [Caenorhabditis elegans] 2.0E-74
blast AAB96709 Hypothetical protein F49D11.3 [Caenorhabditis elegans] ref|NP_492846.1| F49D11.3 [Caenorhabditis elegans] 5.0E-70
Protein Domains
Database ID Description E-Value
Pfam IPR007669 EMBL-EBI Protein of unknown function DUF595 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:177589_AT
attttccaccgtctgaattgctcaatgacagtaacacagttagattggcgtttataaggg
atccatttcagcgttttgtctcattttatctagacaaatgtgtgaactccaatatgtgcc
aatcttgcggaaccaacatgacatgtgtagtggacaagatctatacgggactcagaaaga
ttcagaccaactggaatgggaccgtaccgtttacggatcgaatgattttgcacacggcaa
catattcttggaactgtgactttcgcaaagatttttcaaaatgggagttcatatacattg
aacctgaaaaacatgaacgaatcagagcgataaatcatctttcaagtgttatgaaaaaac
agggagtcaacgaaactgttattgggagattccaaaatgacatgaaaaatggagaaattt
cttatgcaacgtacaaatcacaaaaaagagctgaagcattgcgacttgtaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTTCCACCGTCTGAATTGCTCAA 555 13 740 Antisense
AAGGGATCCATTTCAGCGTTTTGTC 488 159 795 Antisense
CAGCGTTTTGTCTCATTTTATCTAG 285 203 808 Antisense
GTGTGAACTCCAATATGTGCCAATC 26 489 839 Antisense
TGTGCCAATCTTGCGGAACCAACAT 353 557 854 Antisense
GTGGACAAGATCTATACGGGACTCA 439 491 889 Antisense
GACCAACTGGAATGGGACCGTACCG 166 383 924 Antisense
GGATCGAATGATTTTGCACACGGCA 307 511 954 Antisense
GCACACGGCAACATATTCTTGGAAC 496 317 969 Antisense
TTCTTGGAACTGTGACTTTCGCAAA 120 679 984 Antisense
GAGCTGAAGCATTGCGACTTGTACA 613 387 1187 Antisense
Sequence Source Affymetrix Proprietary Database