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[177588_at]

Description T28F3.7 /REP_DB=WormBase Gene ID /WP=CE20117 /TR=Q9XUC1 /GB=CAB05300.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 54      4grp_total > 16      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 17.8
(-2.1)
A 		7.3
(-3)
A 		41
(-0.2)
A 		80
(3)
A 		73
B 13.3
(-1.4)
A 		30.1
(3)
A 		7.3
(-3)
A 		28.8
(2.7)
A 		23
C 5.5
(-3)
A 		27.2
(-1.5)
A 		42.2
(-0.4)
A 		90.5
(3)
A 		85
avr 12.2
(-3) 		21.5
(-2) 		30.2
(-1) 		66.4
(3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 15.4
(-0.9)
A 		2.5
(-3)
A 		38.7
(3)
A 		27.4
(1.1)
A 		3.9
(-2.8)
A 		33.3
(2.1)
A 		36
B 33.3
(0.7)
A 		7.2
(-3)
A 		49.2
(3)
A 		9.1
(-2.7)
A 		10.2
(-2.6)
A 		13.9
(-2)
A 		42
C 4.9
(-3)
A 		41.8
(3)
A 		24.8
(0.2)
A 		16.7
(-1.1)
A 		12.6
(-1.7)
A 		13
(-1.7)
A 		37
avr 17.9
(-1.1) 		17.2
(-1.3) 		37.6
(3) 		17.7
(-1.2) 		8.9
(-3) 		20.1
(-0.7) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 6.5
(-0.1)
A 		1.6
(-3)
A 		10.7
(2.4)
A 		11.7
(3)
A 		10
B 4.3
(-0.3)
A 		7.4
(3)
A 		1.7
(-3)
A 		6.1
(1.6)
A 		6
C 1.8
(-3)
A 		7.8
(-0.3)
A 		14.7
(2.7)
A 		15.3
(3)
A 		14
avr 4.2
(-3) 		5.6
(-1.8) 		9
(1.2) 		11
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 2.8
(-1.5)
A 		0.9
(-3)
A 		8.4
(3)
A 		6.9
(1.8)
A 		1.2
(-2.8)
A 		8.1
(2.8)
A 		8
B 11.6
(2.8)
A 		2.4
(-3)
A 		12
(3)
A 		2.4
(-3)
A 		4.1
(-1.9)
A 		5.2
(-1.3)
A 		10
C 1.8
(-3)
A 		12.8
(3)
A 		6.3
(-0.5)
A 		3.4
(-2.1)
A 		4.1
(-1.7)
A 		4.4
(-1.6)
A 		11
avr 5.4
(-0.6) 		5.4
(-0.6) 		8.9
(3) 		4.2
(-1.9) 		3.1
(-3) 		5.9
(-0.1) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177588_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9331
Sequence Type Exemplar sequence
Representative Public ID T28F3.7 NCBI
Target Description T28F3.7 /REP_DB=WormBase Gene ID /WP=CE20117 /TR=Q9XUC1 /GB=CAB05300.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070673(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070673 NCBI Caenorhabditis elegans T28F3.7 (T28F3.7) mRNA, complete cds. 11/11 None
SNAP00000032162 ENSEMBL cdna:SNAP chromosome:CEL140:IV:17302197:17302840:-1 11/11 None
GENEFINDER00000032171 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:17302197:17304295:-1 11/11 None
T28F3.7 ENSEMBL cdna:known chromosome:CEL140:IV:17302197:17304295:-1 gene:T28F3.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17302202-17304301(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T28F3.7
Entrez Gene 189056 Entrez gene
SwissProt Q9XUC1 EMBL-EBI
WormBase CE28691 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05300 Hypothetical protein T28F3.7 [Caenorhabditis elegans] ref|NP_503074.1| T28F3.7 [Caenorhabditis elegans] 0.0
blast CAE57417 Hypothetical protein CBG00374 [Caenorhabditis briggsae] 1.0E-167
blast CAB05301 Hypothetical protein T28F3.8 [Caenorhabditis elegans] ref|NP_503075.1| T28F3.8 [Caenorhabditis elegans] 1.0E-167
blast CAE57417 Hypothetical protein CBG00374 [Caenorhabditis briggsae] 1.0E-160
blast CAB05301 Hypothetical protein T28F3.8 [Caenorhabditis elegans] ref|NP_503075.1| T28F3.8 [Caenorhabditis elegans] 1.0E-158
blast CAB05300 Hypothetical protein T28F3.7 [Caenorhabditis elegans] ref|NP_503074.1| T28F3.7 [Caenorhabditis elegans] 1.0E-105
Sequence
Target Sequence 
>C. ELEGANS:177588_AT
gacagtcgatgagtaccaaggagctgcattacgaatggagttgttgaatgactgttatac
tagtcacgcggcttctgttatcatcaccgactgtgcaggagtaattagtgccaagtatga
ctccattcaaaacatccaaatcgactacattttcactggaaactcaacttttcctcacta
ctcatttgttccattcttttgtgaccaaatatctagaactgaggagaactgcgtaccggg
aactttaggcaaatataacattcaatttgtagccggcgagttcactgtgattaggtcatt
ccagtgtaggccaggagttgggaagattaattcgaactgtcgaaacctggattcaaacgg
aaattattactgcaaccgaaaccaacttccgtatatgagaggaccaacgggccaagtgcc
tgactgccttggacatggcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACAGTCGATGAGTACCAAGGAGCT 374 369 1134 Antisense
CGGCTTCTGTTATCATCACCGACTG 695 241 1202 Antisense
TAGTGCCAAGTATGACTCCATTCAA 102 653 1239 Antisense
TCACTACTCATTTGTTCCATTCTTT 524 627 1308 Antisense
GAGAACTGCGTACCGGGAACTTTAG 236 389 1357 Antisense
TTTGTAGCCGGCGAGTTCACTGTGA 418 667 1399 Antisense
TTAGGTCATTCCAGTGTAGGCCAGG 611 671 1424 Antisense
GAACTGTCGAAACCTGGATTCAAAC 440 347 1467 Antisense
TGCAACCGAAACCAACTTCCGTATA 165 567 1504 Antisense
ATGAGAGGACCAACGGGCCAAGTGC 21 23 1528 Antisense
TGCCTGACTGCCTTGGACATGGCCA 474 585 1550 Antisense
Sequence Source Affymetrix Proprietary Database