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[177587_at]

Description F11A5.8 /REP_DB=WormBase Gene ID /WP=CE15786 /TR=O17792 /GB=CAB07360.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 24      4grp_total > 56      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 10.6
(-1.6)
A 		15.3
(3)
A 		10.6
(-1.6)
A 		9.2
(-3)
A 		6
B 2.3
(-2.1)
A 		3.4
(3)
A 		2.1
(-3)
A 		2.6
(-0.7)
A 		1
C 2
(-3)
A 		5.5
(-2.1)
A 		25.7
(3)
A 		5.6
(-2.1)
A 		24
avr 5
(-3) 		8.1
(-0.6) 		12.8
(3) 		5.8
(-2.4) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 42.3
(3)
A 		1.8
(-3)
A 		4.6
(-2.6)
A 		6.2
(-2.3)
A 		1.8
(-3)
A 		2.9
(-2.8)
A 		41
B 1.6
(-3)
A 		21.7
(3)
A 		17.7
(1.8)
A 		3.2
(-2.5)
A 		1.5
(-3)
A 		1.6
(-3)
A 		20
C 1.3
(-3)
A 		2.2
(-0.5)
A 		2.4
(-0)
A 		1.5
(-2.5)
A 		2.5
(0.3)
A 		3.5
(3)
A 		2
avr 15.1
(3) 		8.6
(0) 		8.2
(-0.1) 		3.6
(-2.2) 		1.9
(-3) 		2.7
(-2.6) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 3.9
(3)
A 		3.3
(1.6)
A 		2.8
(0.4)
A 		1.4
(-3)
A 		3
B 0.7
(1)
A 		0.8
(3)
A 		0.5
(-3)
A 		0.6
(-1)
A 		0
C 0.7
(-3)
A 		1.6
(-2.3)
A 		9
(3)
A 		0.9
(-2.9)
A 		8
avr 1.8
(-1.5) 		1.9
(-1.3) 		4.1
(3) 		1
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 7.8
(3)
A 		0.6
(-2.9)
A 		1
(-2.6)
A 		1.6
(-2.1)
A 		0.5
(-3)
A 		0.7
(-2.8)
A 		7
B 0.5
(-3)
A 		7.2
(3)
A 		4.3
(0.4)
A 		0.8
(-2.7)
A 		0.6
(-2.9)
A 		0.6
(-2.9)
A 		7
C 0.5
(-1.7)
A 		0.7
(-0.3)
A 		0.6
(-1)
A 		0.3
(-3)
A 		0.8
(0.3)
A 		1.2
(3)
A 		1
avr 2.9
(3) 		2.8
(2.7) 		2
(0.7) 		0.9
(-2.2) 		0.6
(-3) 		0.8
(-2.5) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177587_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14469
Sequence Type Exemplar sequence
Representative Public ID F11A5.8 NCBI
Target Description F11A5.8 /REP_DB=WormBase Gene ID /WP=CE15786 /TR=O17792 /GB=CAB07360.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074687(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074687 NCBI Caenorhabditis elegans F11A5.8 (F11A5.8) mRNA, complete cds. 11/11 None
SNAP00000027000 ENSEMBL cdna:SNAP chromosome:CEL140:V:16209526:16212486:-1 11/11 None
GENEFINDER00000027018 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16209526:16212486:-1 11/11 None
F11A5.8 ENSEMBL cdna:known chromosome:CEL140:V:16209526:16212486:-1 gene:F11A5.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16209525-16212486(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F11A5.8
Entrez Gene 184335 Entrez gene
SwissProt O17792 EMBL-EBI
WormBase CE15786 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16747 transferase activity, transferring groups other than amino-acyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07360 Hypothetical protein F11A5.8 [Caenorhabditis elegans] ref|NP_507088.1| F11A5.8 [Caenorhabditis elegans] 0.0
blast CAB03808 Hypothetical protein B0399.2 [Caenorhabditis elegans] emb|CAA21519.2| Hypothetical protein B0399.2 [Caenorhabditis elegans] ref|NP_507799.2| B0399.2 [Caenorhabditis elegans] 0.0
blast CAB11538 Hypothetical protein H12I19.4 [Caenorhabditis elegans] ref|NP_502710.2| H12I19.4 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507088.1 9 7-26,30-49,70-89,134-156,169-191,259-276,288-310,314-336,349-366
F11A5.8 9 7-26,30-49,70-89,134-156,169-191,259-276,288-310,314-336,349-366
SNAP00000027000 9 7-26,30-49,70-89,134-156,169-191,259-276,288-310,314-336,349-366
GENEFINDER00000027018 9 7-26,30-49,70-89,134-156,169-191,259-276,288-310,314-336,349-366
Sequence
Target Sequence 
>C. ELEGANS:177587_AT
atccgggcacagttcaacggtaattattcggattggagaacgctgtatattgacggctgc
aacggtttctttcacaatcagaatttactgacgtcgttcggaacttacgaacaaagctcc
atacaaatagtcaggaaacaagtggaattgcataaaccaaatgttcttttaattgttcct
agatatactaggaccttgaaacagccaatattggatattgaaacagatgaggtgttgaga
ataatgaatgagaatttggcgttttatgagagatttgtcaagaaaatatacatcctggca
ccgcatcccttgtacccactgaatttcatgaacaggtacctcaacacagttaccaggaag
cctatggagctggagagccttcacttgaagaaatccgatgtggacgaggattggatgact
gcacgagagcggtttagcaggattaaatgcgagaagtgcaaggttttcgaccttggcgat
gtctttttagaaaacaatatgtatctgacttttgacagacaaaccaagctatcatatgta
gataatggaattcacctaacgggtccaggag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCCGGGCACAGTTCAACGGTAATT 259 19 1363 Antisense
GAGAACGCTGTATATTGACGGCTGC 91 391 1398 Antisense
TATTGACGGCTGCAACGGTTTCTTT 245 655 1410 Antisense
GAATTTACTGACGTCGTTCGGAACT 190 325 1443 Antisense
AAAATATACATCCTGGCACCGCATC 51 135 1645 Antisense
TCCCTTGTACCCACTGAATTTCATG 271 597 1668 Antisense
GAACAGGTACCTCAACACAGTTACC 306 349 1692 Antisense
GGACGAGGATTGGATGACTGCACGA 126 525 1764 Antisense
GATGACTGCACGAGAGCGGTTTAGC 384 411 1776 Antisense
GTTTTCGACCTTGGCGATGTCTTTT 518 447 1825 Antisense
GGAATTCACCTAACGGGTCCAGGAG 103 531 1909 Antisense
Sequence Source Affymetrix Proprietary Database