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[177586_at]

Description C15C6.1 /REP_DB=WormBase Gene ID /WP=CE18501 /TR=Q9XVT5 /GB=CAB02726.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 80      4grp_highest_8_8 > 02      4grp_high_8_8 > 46      6grp_highest_nonorm > 53      6grp_total > 82      4grp_total > 49      6grp_high1_sub > 02_03_04_05      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1475
1 2 3 4 range
A 127
(-3)
P 		1430.1
(2.7)
P 		1510.2
(3)
P 		148.3
(-2.9)
P 		1383
B 98.4
(-3)
P 		1545
(2.9)
P 		1573.4
(3)
P 		100.5
(-3)
P 		1475
C 137.6
(-2.9)
P 		1422.8
(3)
P 		1261.3
(2.3)
P 		109.7
(-3)
P 		1313
avr 121
(-3) 		1466
(3) 		1448.3
(2.9) 		119.5
(-3) 		1347

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 849
1 2 3 4 5 6 range
A 430.9
(-1.7)
P 		887.5
(2.4)
P 		810.2
(1.7)
P 		870.3
(2.2)
P 		955.1
(3)
P 		286.5
(-3)
P 		669
B 369
(-2.9)
P 		898.8
(1.4)
P 		851.5
(1)
P 		1093.2
(3)
P 		1003.6
(2.3)
P 		351.3
(-3)
P 		742
C 282.5
(-3)
P 		1131.4
(3)
P 		761.1
(0.4)
P 		1078.3
(2.6)
P 		760.5
(0.4)
P 		378.6
(-2.3)
P 		849
avr 360.8
(-2.8) 		972.6
(2.6) 		807.6
(1.2) 		1013.9
(3) 		906.4
(2) 		338.8
(-3) 		675
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 421
1 2 3 4 range
A 46.3
(-2.6)
P 		310.4
(1.6)
P 		394.8
(3)
P 		21.7
(-3)
P 		373
B 31.4
(-2.8)
P 		381.6
(3)
P 		364.6
(2.7)
P 		21.4
(-3)
P 		360
C 45.6
(-2.6)
P 		409.1
(2.6)
P 		439.6
(3)
P 		18.5
(-3)
P 		421
avr 41.1
(-2.7) 		367
(2.5) 		399.7
(3) 		20.5
(-3) 		379

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 338
1 2 3 4 5 6 range
A 79.4
(-2.8)
P 		315.6
(3)
P 		176.4
(-0.4)
P 		220.7
(0.7)
P 		288.2
(2.3)
P 		69.8
(-3)
P 		246
B 128.4
(-3)
P 		299.2
(0.7)
P 		206.8
(-1.3)
P 		289.6
(0.5)
P 		407.8
(3)
P 		131
(-2.9)
P 		279
C 104.7
(-3)
P 		345.2
(3)
P 		193.7
(-0.8)
P 		216.9
(-0.2)
P 		246.1
(0.5)
P 		126.7
(-2.5)
P 		241
avr 104.2
(-3) 		320
(3) 		192.3
(-0.6) 		242.4
(0.8) 		314
(2.8) 		109.2
(-2.9) 		216
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177586_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.694
Sequence Type Exemplar sequence
Representative Public ID C15C6.1 NCBI
Target Description C15C6.1 /REP_DB=WormBase Gene ID /WP=CE18501 /TR=Q9XVT5 /GB=CAB02726.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060678(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060678 NCBI Caenorhabditis elegans C15C6.1 (C15C6.1) mRNA, complete cds. 11/11 None
GENEFINDER00000035694 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12210361:12211597:1 11/11 None
SNAP00000035687 ENSEMBL cdna:SNAP chromosome:CEL140:I:12210710:12211597:1 10/11 None
C15C6.1 ENSEMBL cdna:known chromosome:CEL140:I:12210354:12211777:1 gene:C15C6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12210291-12211528(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C15C6.1
Entrez Gene 173098 Entrez gene
SwissProt Q9XVT5 EMBL-EBI
WormBase CE18501 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02726 Hypothetical protein C15C6.1 [Caenorhabditis elegans] ref|NP_493079.1| C15C6.1 [Caenorhabditis elegans] 1.0E-101
blast CAB02726 Hypothetical protein C15C6.1 [Caenorhabditis elegans] ref|NP_493079.1| C15C6.1 [Caenorhabditis elegans] 4.0E-81
blast CAE56216 Hypothetical protein CBG23843 [Caenorhabditis briggsae] 4.0E-69
blast CAE56216 Hypothetical protein CBG23843 [Caenorhabditis briggsae] 4.0E-56
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493079.1 4 31-53,60-79,94-113,134-156
C15C6.1 4 31-53,60-79,94-113,134-156
GENEFINDER00000035694 4 31-53,60-79,94-113,134-156
SNAP00000035687 4 2-21,26-45,57-79,101-123
Sequence
Target Sequence 
>C. ELEGANS:177586_AT
tgatacaggactcgtcgtcttctcagctacgtgagaagcgaccattaaatacgccgccga
gattcgttttcgggaaacttcacattcatcacacaatgaacgtcatcgtagctgtcgggg
tgctggcaatccttatcatcatgggagctctttacatgaagttcagaaaggcaatgttcg
tcatgatggtcccgtctacagtaaccgtgctcacagtttttgcaatcatttctaagaggc
atcgatttgtttggcctgttgtagcgatttcgatgtttcacgtgattctctcctgttatg
cactcgtcatcttcagcttttacttcttcataaaaccatactacatccttatgatctcca
actggatgtttgatacaatgcatggcgagaagaacgcggcgttctacctccagtcactgg
caatgtacacgtttctgacgtgtttcatgctgttcaacgcgtggcaagcccatgtcggaa
ttcactatattgagcacatcttctccgaacgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGATACAGGACTCGTCGTCTTCTCA 165 565 20 Antisense
GTGCTGGCAATCCTTATCATCATGG 253 479 139 Antisense
TCATGATGGTCCCGTCTACAGTAAC 9 623 200 Antisense
GTAACCGTGCTCACAGTTTTTGCAA 172 463 220 Antisense
GCATCGATTTGTTTGGCCTGTTGTA 421 309 258 Antisense
CTGTTATGCACTCGTCATCTTCAGC 382 239 312 Antisense
CATCTTCAGCTTTTACTTCTTCATA 454 213 327 Antisense
GTCACTGGCAATGTACACGTTTCTG 313 465 432 Antisense
TGTTTCATGCTGTTCAACGCGTGGC 222 561 460 Antisense
GGCAAGCCCATGTCGGAATTCACTA 225 535 482 Antisense
TATTGAGCACATCTTCTCCGAACGT 345 665 507 Antisense
Sequence Source Affymetrix Proprietary Database