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[177585_at]

Description F58A3.3 /REP_DB=WormBase Gene ID /WP=CE11356 /TR=Q93802 /GB=CAB02668.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 04      4grp_total > 21      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 155.8
(2.6)
P 		113.1
(-0.7)
A 		83.8
(-3)
A 		160.5
(3)
P 		77
B 108.8
(-0.2)
P 		86.9
(-1.8)
A 		71.6
(-3)
A 		150.6
(3)
P 		79
C 139.2
(3)
P 		89.3
(-1.3)
A 		69.9
(-3)
A 		134.8
(2.6)
P 		69
avr 134.6
(1.9) 		96.4
(-1.3) 		75.1
(-3) 		148.6
(3) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 123.8
(3)
A 		98.2
(0.7)
A 		101.8
(1)
P 		69.2
(-1.9)
P 		66.4
(-2.1)
A 		56.5
(-3)
A 		67
B 114.3
(3)
A 		90.8
(0.5)
A 		71.9
(-1.5)
A 		97.1
(1.2)
A 		96.2
(1.1)
P 		57.5
(-3)
A 		57
C 69.7
(-2.2)
A 		110.3
(3)
A 		64.8
(-2.8)
A 		77.8
(-1.1)
P 		85.6
(-0.1)
M 		63.2
(-3)
A 		47
avr 102.6
(3) 		99.8
(2.6) 		79.5
(-0.2) 		81.4
(0.1) 		82.7
(0.3) 		59.1
(-3) 		44
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 56.7
(3)
P 		24.5
(-2.6)
A 		21.9
(-3)
A 		23.5
(-2.7)
P 		35
B 34.7
(3)
P 		21.5
(-1.4)
A 		16.6
(-3)
A 		32.1
(2.1)
P 		18
C 46.1
(3)
P 		25.7
(-2.2)
A 		24.4
(-2.6)
A 		22.7
(-3)
P 		23
avr 45.8
(3) 		23.9
(-2.3) 		21
(-3) 		26.1
(-1.8) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 22.8
(-0.4)
A 		34.9
(3)
A 		22.2
(-0.6)
P 		17.6
(-1.9)
P 		20
(-1.2)
A 		13.8
(-3)
A 		21
B 39.8
(3)
A 		30.2
(0.4)
A 		17.5
(-3)
A 		25.7
(-0.8)
A 		39.1
(2.8)
P 		21.4
(-2)
A 		22
C 25.8
(0.4)
A 		33.7
(3)
A 		16.5
(-2.7)
A 		15.6
(-3)
P 		27.7
(1)
M 		21.1
(-1.2)
A 		18
avr 29.5
(1.6) 		32.9
(3) 		18.7
(-3) 		19.6
(-2.6) 		28.9
(1.3) 		18.8
(-3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177585_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16614
Sequence Type Exemplar sequence
Representative Public ID F58A3.3 NCBI
Target Description F58A3.3 /REP_DB=WormBase Gene ID /WP=CE11356 /TR=Q93802 /GB=CAB02668.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077440(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077440 NCBI Caenorhabditis elegans F58A3.3 (F58A3.3) mRNA, complete cds. 11/11 None
SNAP00000041417 ENSEMBL cdna:SNAP chromosome:CEL140:X:11012584:11014334:1 11/11 None
GENEFINDER00000041424 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11012584:11023071:1 11/11 None
F58A3.3 ENSEMBL cdna:known chromosome:CEL140:X:11012584:11013359:1 gene:F58A3.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11012583-11013359(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F58A3.3
Entrez Gene 186482 Entrez gene
SwissProt Q93802 EMBL-EBI
WormBase CE11356 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC70095 Hypothetical protein F58A3.2c [Caenorhabditis elegans] ref|NP_001024724.1| EGg Laying defective family member (egl-15) [Caenorhabditis elegans] 0.0
blast CAD44136 Hypothetical protein F58A3.2d [Caenorhabditis elegans] ref|NP_001024725.1| EGg Laying defective family member (egl-15) [Caenorhabditis elegans] 0.0
blast T22889 hypothetical protein F58A3.2 - Caenorhabditis elegans 0.0
blast CAE70766 Hypothetical protein CBG17517 [Caenorhabditis briggsae] 1.0E-99
blast CAB02668 Hypothetical protein F58A3.3 [Caenorhabditis elegans] ref|NP_509841.1| F58A3.3 [Caenorhabditis elegans] 2.0E-86
blast CAB02668 Hypothetical protein F58A3.3 [Caenorhabditis elegans] ref|NP_509841.1| F58A3.3 [Caenorhabditis elegans] 5.0E-86
blast CAE70766 Hypothetical protein CBG17517 [Caenorhabditis briggsae] 3.0E-32
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 2.3E-75
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.9E-4
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.0E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.8E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000041424 3 185-207,682-704,717-739
Sequence
Target Sequence 
>C. ELEGANS:177585_AT
gatgccttcgaagaaccaaaacctcttcttagaagaacgtctcgaaaaggcagtttccga
aagtttattgttagtttaaccagtccaccgccagaaactgagtttatttatcatgaggaa
caagaagaggacgaggaacttcaagaattacaattaccacccccaccaatgcaaagagtt
tcgagaatgggaagtattcgaaaagcaatgacaataagctttcagaatagcctacggaga
actcgaaaaatatttggaattggcgttgcaccggttactgaatatttaccaaaatctgaa
caagatgttcatattcaaagattcaacagaaacgaatctgtacgacttagtcgatgctcc
acgaagcattacgaagttataaaaacacactccgaagataaaatcttcacaagcgtaagg
cctattcctccgtctagtacgtgtctgttaaccaaattctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGCCTTCGAAGAACCAAAACCTC 171 405 28 Antisense
ACCAGTCCACCGCCAGAAACTGAGT 589 85 106 Antisense
TCAAGAATTACAATTACCACCCCCA 168 629 168 Antisense
CACCCCCACCAATGCAAAGAGTTTC 59 199 185 Antisense
CAGAATAGCCTACGGAGAACTCGAA 368 205 250 Antisense
TGGCGTTGCACCGGTTACTGAATAT 210 535 288 Antisense
AGAAACGAATCTGTACGACTTAGTC 62 1 355 Antisense
CGACTTAGTCGATGCTCCACGAAGC 544 247 370 Antisense
TCACAAGCGTAAGGCCTATTCCTCC 209 629 434 Antisense
TCCTCCGTCTAGTACGTGTCTGTTA 133 591 453 Antisense
GTACGTGTCTGTTAACCAAATTCTT 151 459 464 Antisense
Sequence Source Affymetrix Proprietary Database