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[177584_s_at]

Description F37A8.2 /REP_DB=WormBase Gene ID /WP=CE20754 /TR=Q20112 /GB=CAA84663.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 85      4grp_total > 35      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 3.5
(-3)
A 		24.6
(3)
A 		13.9
(-0)
A 		7
(-2)
A 		21
B 35.5
(1.9)
A 		16.4
(-1.2)
A 		5.1
(-3)
A 		42.4
(3)
A 		37
C 10.5
(-1.5)
A 		21.8
(1.5)
A 		27.3
(3)
A 		5.1
(-3)
A 		22
avr 16.5
(-1.8) 		20.9
(3) 		15.4
(-3) 		18.2
(0.1) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 10.7
(-3)
A 		12.1
(-2.8)
A 		18.1
(-2)
A 		33.5
(-0)
A 		33.2
(-0.1)
A 		56.7
(3)
P 		46
B 2.9
(-3)
A 		11.8
(-1.4)
A 		7.8
(-2.1)
A 		5.5
(-2.5)
A 		36.7
(3)
P 		33.6
(2.4)
P 		34
C 4.2
(-3)
A 		13.1
(-1.7)
A 		33.9
(1.2)
A 		46.4
(3)
A 		22.8
(-0.4)
A 		27.6
(0.3)
P 		42
avr 5.9
(-3) 		12.3
(-1.9) 		19.9
(-0.5) 		28.5
(1.1) 		30.9
(1.5) 		39.3
(3) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1.3
(-2.6)
A 		5.3
(3)
A 		3.6
(0.6)
A 		1
(-3)
A 		4
B 11.3
(3)
A 		4.1
(-1.3)
A 		1.2
(-3)
A 		9
(1.6)
A 		10
C 3.5
(-1.2)
A 		6.3
(0.8)
A 		9.5
(3)
A 		0.9
(-3)
A 		9
avr 5.4
(3) 		5.2
(2.3) 		4.8
(1) 		3.6
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 2
(-3)
A 		4.3
(-1.8)
A 		3.9
(-2)
A 		8.5
(0.3)
A 		10
(1.1)
A 		13.8
(3)
P 		12
B 1
(-3)
A 		3.9
(-1.7)
A 		1.9
(-2.6)
A 		1.4
(-2.8)
A 		14.9
(3)
P 		12.5
(2)
P 		14
C 1.6
(-3)
A 		4
(-1.1)
A 		8.6
(2.5)
A 		9.3
(3)
A 		7.4
(1.5)
A 		9.2
(2.9)
P 		8
avr 1.5
(-3) 		4.1
(-1.5) 		4.8
(-1.1) 		6.4
(-0.1) 		10.8
(2.4) 		11.8
(3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177584_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7858
Sequence Type Exemplar sequence
Representative Public ID F37A8.2 NCBI
Target Description F37A8.2 /REP_DB=WormBase Gene ID /WP=CE20754 /TR=Q20112 /GB=CAA84663.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065393(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065393 NCBI Caenorhabditis elegans F37A8.2 (F37A8.2) mRNA, complete cds. 11/11 A 
SNAP00000009908 ENSEMBL cdna:SNAP chromosome:CEL140:III:3929282:3931361:-1 11/11 None
GENEFINDER00000009914 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3929526:3931400:-1 11/11 None
F37A8.2 ENSEMBL cdna:known chromosome:CEL140:III:3929526:3931400:-1 gene:F37A8.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13594491-13596254(+) 94.35 94.35
chrIII:3929525-3931400(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F37A8.2
Entrez Gene 175511 Entrez gene
SwissProt Q20112 EMBL-EBI
WormBase CE20754 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA84663 Hypothetical protein F37A8.2 [Caenorhabditis elegans] ref|NP_497794.1| F37A8.2 [Caenorhabditis elegans] 0.0
blast CAA16353 Hypothetical protein Y45F10B.2 [Caenorhabditis elegans] ref|NP_502623.1| Y45F10B.2 [Caenorhabditis elegans] 0.0
blast CAA16353 Hypothetical protein Y45F10B.2 [Caenorhabditis elegans] ref|NP_502623.1| Y45F10B.2 [Caenorhabditis elegans] 1.0E-168
blast CAE74568 Hypothetical protein CBG22332 [Caenorhabditis briggsae] 2.0E-84
Sequence
Target Sequence 
>C. ELEGANS:177584_S_AT
agggatcatcacgtcaggagagtaagaagtactatgagaaggatatttgtcgaaagcaaa
gagcaaaggcactgggtatgaaagatcttggaatagatgtgaagccggcttcttctgcaa
gctcaaatccgatcaaagaaacatccgattcttcatctgaaactaactgttctctgtctt
ctggaacagtttccttcaaccatagaatgttgaactcattgactcctgtcgccgaaaatt
ccgttgcaatcatgatggtgctcgtggagccggtcgaggtgtacggcattgttcatagct
acgtaaaaatgagcttcccactcaacacgaatcttgccaaagctcttggggcaatgttgc
atcggaagaagaaagttctcggagacaatgtggcaaatggacaactgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGGATCATCACGTCAGGAGAGTAA 533 57 623 Antisense
TCTTGGAATAGATGTGAAGCCGGCT 287 605 708 Antisense
TCTTCATCTGAAACTAACTGTTCTC 435 615 772 Antisense
GAAACTAACTGTTCTCTGTCTTCTG 193 357 781 Antisense
CTAACTGTTCTCTGTCTTCTGGAAC 556 225 785 Antisense
TGTTCTCTGTCTTCTGGAACAGTTT 218 563 790 Antisense
GGAGCCGGTCGAGGTGTACGGCATT 139 521 888 Antisense
CCGGTCGAGGTGTACGGCATTGTTC 574 263 892 Antisense
CTCTTGGGGCAATGTTGCATCGGAA 480 229 965 Antisense
AAGTTCTCGGAGACAATGTGGCAAA 267 157 995 Antisense
GACAATGTGGCAAATGGACAACTGT 251 365 1006 Antisense
Sequence Source Affymetrix Proprietary Database