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[177580_at] 7TM chemoreceptor, srw family

Description C41G6.7 /REP_DB=WormBase Gene ID /WP=CE15704 /TR=O17660 /GB=CAB02832.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 19      6grp_cgc > 10      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 12.1
(-3)
A 		19.3
(-1.9)
A 		20.1
(-1.7)
A 		50.2
(3)
P 		38
B 17.9
(-2.2)
A 		55.1
(1.9)
A 		10.7
(-3)
A 		65.6
(3)
A 		55
C 31.7
(0.2)
A 		6.2
(-3)
A 		6.5
(-3)
A 		54.7
(3)
A 		49
avr 20.6
(-1.9) 		26.9
(-1) 		12.4
(-3) 		56.8
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 67
(3)
A 		12.3
(-2.3)
A 		31.3
(-0.4)
A 		29.3
(-0.6)
A 		4.7
(-3)
A 		6.4
(-2.8)
A 		62
B 34.9
(2)
A 		7.8
(-2.3)
A 		14.1
(-1.3)
A 		10.3
(-1.9)
A 		40.8
(3)
A 		3.6
(-3)
A 		37
C 21.8
(0.2)
A 		26.8
(1.6)
A 		32
(3)
A 		10.2
(-3)
A 		13.4
(-2.1)
A 		17.8
(-0.9)
A 		22
avr 41.2
(3) 		15.6
(-1.8) 		25.8
(0.1) 		16.6
(-1.6) 		19.6
(-1.1) 		9.3
(-3) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 4.4
(-2.6)
A 		4.2
(-3)
A 		5.2
(-1.1)
A 		7.4
(3)
P 		3
B 5.7
(-1.3)
A 		13.6
(2.8)
A 		2.5
(-3)
A 		14
(3)
A 		12
C 10.5
(3)
A 		1.8
(-3)
A 		2.3
(-2.7)
A 		9.2
(2.1)
A 		9
avr 6.9
(0.1) 		6.5
(-0.2) 		3.3
(-3) 		10.2
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 12.4
(3)
A 		4.4
(-1.4)
A 		6.8
(-0.1)
A 		7.4
(0.3)
A 		1.4
(-3)
A 		1.6
(-2.9)
A 		11
B 12.2
(1.3)
A 		2.6
(-2.5)
A 		3.4
(-2.2)
A 		2.7
(-2.5)
A 		16.6
(3)
A 		1.3
(-3)
A 		15
C 8.1
(2.9)
A 		8.2
(3)
A 		8.1
(2.9)
A 		2
(-3)
A 		4.3
(-0.8)
A 		6
(0.9)
A 		6
avr 10.9
(3) 		5.1
(-1.4) 		6.1
(-0.6) 		4
(-2.2) 		7.4
(0.3) 		3
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177580_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13202
Sequence Type Exemplar sequence
Representative Public ID C41G6.7 NCBI
Target Description C41G6.7 /REP_DB=WormBase Gene ID /WP=CE15704 /TR=O17660 /GB=CAB02832.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074362(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074362 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-24) (srw-24) mRNA, complete cds. 11/11 None
SNAP00000010438 ENSEMBL cdna:SNAP chromosome:CEL140:V:15226554:15227945:1 11/11 None
GENEFINDER00000010448 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15226554:15230058:1 11/11 None
C41G6.7 ENSEMBL cdna:known chromosome:CEL140:V:15226554:15227945:1 gene:C41G6.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15226553-15227945(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-24
Ensembl C41G6.7
Entrez Gene 183383 Entrez gene
SwissProt O17660 EMBL-EBI
WormBase CE38159 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02832 Hypothetical protein C41G6.7 [Caenorhabditis elegans] ref|NP_506763.2| Serpentine Receptor, class W family member (srw-24) [Caenorhabditis elegans] 0.0
blast CAB02833 Hypothetical protein C41G6.8 [Caenorhabditis elegans] ref|NP_506764.2| Serpentine Receptor, class W family member (srw-14) [Caenorhabditis elegans] 0.0
blast CAB02828 Hypothetical protein C41G6.3 [Caenorhabditis elegans] ref|NP_506766.1| Serpentine Receptor, class W family member (srw-15) [Caenorhabditis elegans] 1.0E-143
blast CAB04420 Hypothetical protein F49A5.8 [Caenorhabditis elegans] ref|NP_507264.2| Serpentine Receptor, class W family member (srw-23) [Caenorhabditis elegans] 1.0E-100
blast CAB04420 Hypothetical protein F49A5.8 [Caenorhabditis elegans] ref|NP_507264.2| Serpentine Receptor, class W family member (srw-23) [Caenorhabditis elegans] 3.0E-97
blast CAD89721 Hypothetical protein C06B8.9 [Caenorhabditis elegans] ref|NP_001021374.1| Serpentine Receptor, class W family member (srw-21) [Caenorhabditis elegans] 3.0E-36
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506763.2 7 42-64,77-99,129-151,164-186,229-251,271-293,319-341
C41G6.7 7 42-64,77-99,129-151,164-186,229-251,271-293,347-369
SNAP00000010438 7 42-64,77-99,129-151,164-186,229-251,271-293,319-341
GENEFINDER00000010448 12 47-69,79-98,142-164,210-232,252-274,410-427,434-456,503-522,535-557,603-625,648-670,690-712
Sequence
Target Sequence 
>C. ELEGANS:177580_AT
gtagacacctccgatatgtgctcataatgtcgacagatgttgatattgacgcttattcaa
taacccctaaccaaaactttgttgagaggatatatcgcgttcttcaattcaccctttacc
cactactcactatttcattacttattcaactgtgcattatcaagaagaaaagaaaggcta
tgagacagaacgagaatcaaatatcggataacacaacgctattaattctcacaatgactt
tcacgttcatgttctcagaggggttgatttggatctggatctttattgacgctgatgacc
gtttttactatcattttgatttagaataccaagtagtgagcgtgactcacaatatttgta
tcatgtatatttcttcgatgattaataattgcagggagtacaaggaaattttagttgctc
tctgctttacttttcgaatcgtcaattcgatatcccatattctcgtttccataatgatgt
cttcacattgtcgggacactgtaaaatcaattgttttttggggcaaaattgctaaactct
tcaatcatcgacttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAGACACCTCCGATATGTGCTCAT 87 455 605 Antisense
TACCCACTACTCACTATTTCATTAC 644 649 721 Antisense
AACACAACGCTATTAATTCTCACAA 268 135 814 Antisense
TGACTTTCACGTTCATGTTCTCAGA 162 571 839 Antisense
GGATCTGGATCTTTATTGACGCTGA 133 511 875 Antisense
GACGCTGATGACCGTTTTTACTATC 331 381 892 Antisense
AGGAAATTTTAGTTGCTCTCTGCTT 419 55 1007 Antisense
CTCTCTGCTTTACTTTTCGAATCGT 288 231 1022 Antisense
CAATTCGATATCCCATATTCTCGTT 162 181 1047 Antisense
GATGTCTTCACATTGTCGGGACACT 282 409 1080 Antisense
GCTAAACTCTTCAATCATCGACTTT 148 303 1135 Antisense
Sequence Source Affymetrix Proprietary Database