[Home] | [Total List]

[177579_at]

Description K03D3.5 /REP_DB=WormBase Gene ID /WP=CE16211 /TR=O45643 /GB=CAB05242.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 3.2
(-2.8)
A 		2.4
(-3)
A 		4.7
(-2.6)
A 		33.9
(3)
A 		32
B 11.8
(-1.1)
A 		5.2
(-2.2)
A 		0.6
(-3)
A 		36.1
(3)
A 		36
C 12.2
(-1.8)
A 		5.6
(-2.5)
A 		1.1
(-3)
A 		55.2
(3)
A 		54
avr 9.1
(-1.9) 		4.4
(-2.7) 		2.1
(-3) 		41.7
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 4.6
(-2.1)
A 		21.7
(3)
A 		13
(0.4)
A 		4.5
(-2.1)
A 		4.6
(-2.1)
A 		1.4
(-3)
A 		20
B 15.6
(1.1)
A 		3
(-2.6)
A 		2.3
(-2.8)
A 		21.9
(3)
A 		8.8
(-0.9)
A 		1.6
(-3)
A 		20
C 1.2
(-3)
A 		25.1
(3)
A 		3.7
(-2.4)
A 		3.9
(-2.3)
A 		10.3
(-0.7)
A 		2.6
(-2.6)
A 		24
avr 7.1
(-0.9) 		16.6
(3) 		6.3
(-1.2) 		10.1
(0.3) 		7.9
(-0.6) 		1.9
(-3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1.2
(-2.1)
A 		0.5
(-3)
A 		1.2
(-2.1)
A 		5
(3)
A 		5
B 3.8
(-0.1)
A 		1.3
(-2.1)
A 		0.1
(-3)
A 		7.7
(3)
A 		8
C 4
(-0.6)
A 		1.6
(-2.2)
A 		0.4
(-3)
A 		9.3
(3)
A 		9
avr 3
(-0.9) 		1.1
(-2.6) 		0.6
(-3) 		7.3
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 0.9
(-2.5)
A 		7.7
(3)
A 		2.8
(-1)
A 		1.1
(-2.4)
A 		1.4
(-2.1)
A 		0.3
(-3)
A 		7
B 5.4
(2.5)
A 		1
(-2.5)
A 		0.6
(-3)
A 		5.8
(3)
A 		3.6
(0.5)
A 		0.6
(-3)
A 		5
C 0.4
(-3)
A 		7.7
(3)
A 		0.9
(-2.6)
A 		0.8
(-2.7)
A 		3.3
(-0.6)
A 		0.9
(-2.6)
A 		7
avr 2.2
(-1) 		5.5
(3) 		1.4
(-2) 		2.6
(-0.6) 		2.8
(-0.3) 		0.6
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177579_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10106
Sequence Type Exemplar sequence
Representative Public ID K03D3.5 NCBI
Target Description K03D3.5 /REP_DB=WormBase Gene ID /WP=CE16211 /TR=O45643 /GB=CAB05242.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070540(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070540 NCBI Caenorhabditis elegans K03D3.5 (K03D3.5) mRNA, complete cds. 11/11 None
SNAP00000040349 ENSEMBL cdna:SNAP chromosome:CEL140:IV:16320100:16320467:-1 11/11 None
GENEFINDER00000040356 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16320100:16320467:-1 11/11 None
K03D3.5 ENSEMBL cdna:known chromosome:CEL140:IV:16320100:16320467:-1 gene:K03D3.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16320105-16320473(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K03D3.5
Entrez Gene 186936 Entrez gene
SwissProt O45643 EMBL-EBI
WormBase CE16211 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05242 Hypothetical protein K03D3.5 [Caenorhabditis elegans] ref|NP_502941.1| K03D3.5 [Caenorhabditis elegans] 4.0E-46
blast AAC25816 Hypothetical protein C09G12.5 [Caenorhabditis elegans] ref|NP_500356.1| C09G12.5 [Caenorhabditis elegans] 7.0E-43
Sequence
Target Sequence 
>C. ELEGANS:177579_AT
ttcaaacaacttttcctattctccgctgtttttctcgtactgctcgaggcttcaactcca
gcagccccatcgagagaaagcgtagtagccggtcttgttgccaatggtctcaagaaaaat
ttggcggagaagattattgagctaagagaaaagtacaatacggaaatcatcaaggcgaat
gcttcgggcaatcagaagctagcgcaggctacgtggaacaagcatcaggagttgtaccat
aagctgtttgcaaaggttaccaagga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCAAACAACTTTTCCTATTCTCCG 293 685 16 Antisense
CTGTTTTTCTCGTACTGCTCGAGGC 674 239 41 Antisense
CTCGTACTGCTCGAGGCTTCAACTC 657 231 49 Antisense
CAGCAGCCCCATCGAGAGAAAGCGT 282 205 74 Antisense
GTTGCCAATGGTCTCAAGAAAAATT 499 433 112 Antisense
AAGGCGAATGCTTCGGGCAATCAGA 220 161 187 Antisense
CGGGCAATCAGAAGCTAGCGCAGGC 603 243 200 Antisense
GAAGCTAGCGCAGGCTACGTGGAAC 305 343 210 Antisense
AGCGCAGGCTACGTGGAACAAGCAT 161 83 216 Antisense
GAGTTGTACCATAAGCTGTTTGCAA 229 397 244 Antisense
AGCTGTTTGCAAAGGTTACCAAGGA 447 79 257 Antisense
Sequence Source Affymetrix Proprietary Database