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[177578_at]

Description F15D3.5 /REP_DB=WormBase Gene ID /WP=CE15852 /TR=Q9XVQ3 /GB=CAB02954.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 50      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 22.6
(-0.4)
A 		24
(-0.1)
A 		40.7
(3)
A 		8.4
(-3)
A 		32
B 25
(-1.8)
A 		50.7
(3)
A 		38.8
(0.8)
A 		18.5
(-3)
A 		32
C 6.3
(-3)
A 		26.6
(3)
A 		7
(-2.8)
A 		24
(2.2)
A 		20
avr 18
(-2.6) 		33.8
(3) 		28.8
(1.2) 		17
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 12
(-2.2)
A 		3.2
(-3)
A 		38.2
(0.2)
A 		5.5
(-2.8)
A 		5
(-2.8)
A 		69.1
(3)
A 		66
B 19.7
(3)
A 		3.3
(-3)
A 		18.5
(2.6)
A 		4.7
(-2.5)
A 		19.4
(2.9)
A 		15.1
(1.3)
A 		16
C 17.5
(3)
A 		16.5
(2.6)
A 		4.4
(-2.2)
A 		15.6
(2.2)
A 		2.5
(-3)
A 		7.8
(-0.9)
A 		15
avr 16.4
(-0.7) 		7.7
(-3) 		20.4
(0.3) 		8.6
(-2.8) 		9
(-2.7) 		30.7
(3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 8.2
(1.5)
A 		5.2
(-0.4)
A 		10.6
(3)
A 		1.2
(-3)
A 		9
B 8
(-0.1)
A 		12.5
(3)
A 		9
(0.6)
A 		3.9
(-3)
A 		9
C 2.1
(-3)
A 		7.7
(3)
A 		2.4
(-2.7)
A 		4.1
(-0.9)
A 		6
avr 6.1
(0.3) 		8.5
(3) 		7.3
(1.7) 		3.1
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 2.2
(-2.6)
A 		1.1
(-3)
A 		8.3
(-0.2)
A 		1.4
(-2.9)
A 		1.5
(-2.8)
A 		16.8
(3)
A 		16
B 6.9
(2.1)
A 		1.1
(-3)
A 		4.5
(-0)
A 		1.2
(-2.9)
A 		7.9
(3)
A 		5.6
(1)
A 		7
C 6.5
(3)
A 		5
(1.4)
A 		1.1
(-2.7)
A 		3.1
(-0.6)
A 		0.8
(-3)
A 		2.6
(-1.1)
A 		6
avr 5.2
(0.1) 		2.4
(-2.5) 		4.6
(-0.5) 		1.9
(-3) 		3.4
(-1.6) 		8.3
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177578_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.681
Sequence Type Exemplar sequence
Representative Public ID F15D3.5 NCBI
Target Description F15D3.5 /REP_DB=WormBase Gene ID /WP=CE15852 /TR=Q9XVQ3 /GB=CAB02954.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060550(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060550 NCBI Caenorhabditis elegans F15D3.5 (F15D3.5) mRNA, complete cds. 11/11 None
F15D3.5 ENSEMBL cdna:known chromosome:CEL140:I:11579008:11579288:-1 gene:F15D3.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000000121 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11578938-11579219(-) 90.91 100.0
Public Domain and Genome References
Gene Title
Ensembl F15D3.5
Entrez Gene 184527 Entrez gene
SwissProt Q9XVQ3 EMBL-EBI
WormBase CE15852 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02954 Hypothetical protein F15D3.5 [Caenorhabditis elegans] ref|NP_492951.1| F15D3.5 [Caenorhabditis elegans] 3.0E-30
Sequence
Target Sequence 
>C. ELEGANS:177578_AT
tctcgaatccggactacattccgccgaaggccttggatcttctgaaacctgcgctcacga
tacgggccccgccagaggaaacagggatgctgggcgagcttcaagaagatgttctgcaag
ttctaagccttccgtgtaggcacacaaatgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCGAATCCGGACTACATTCCGCC 73 611 44 Antisense
TACATTCCGCCGAAGGCCTTGGATC 339 639 58 Antisense
CGCCGAAGGCCTTGGATCTTCTGAA 269 257 65 Antisense
GGGCCCCGCCAGAGGAAACAGGGAT 17 13 107 Antisense
GAAACAGGGATGCTGGGCGAGCTTC 692 335 121 Antisense
GGGATGCTGGGCGAGCTTCAAGAAG 681 495 127 Antisense
GGCGAGCTTCAAGAAGATGTTCTGC 220 541 136 Antisense
GATGTTCTGCAAGTTCTAAGCCTTC 603 409 151 Antisense
GCAAGTTCTAAGCCTTCCGTGTAGG 367 321 159 Antisense
CTAAGCCTTCCGTGTAGGCACACAA 189 227 166 Antisense
CCTTCCGTGTAGGCACACAAATGCC 583 269 171 Antisense
Sequence Source Affymetrix Proprietary Database