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[177577_s_at]

Description C04G2.8 /REP_DB=WormBase Gene ID /WP=CE05216 /TR=Q17626 /GB=CAA94670.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 41      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 77.3
(-1.9)
A 		89.7
(1.2)
A 		96.7
(3)
A 		72.8
(-3)
A 		24
B 64.4
(-3)
A 		138.8
(3)
A 		124.8
(1.9)
A 		77.3
(-2)
A 		74
C 25.2
(-3)
A 		116.7
(3)
A 		93.1
(1.5)
A 		107.7
(2.4)
A 		92
avr 55.6
(-3) 		115.1
(3) 		104.9
(2) 		85.9
(0.1) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 802
1 2 3 4 5 6 range
A 119
(-2.6)
A 		63.2
(-3)
A 		70.4
(-2.9)
A 		123.7
(-2.5)
A 		494.7
(0.4)
P 		828.5
(3)
P 		765
B 94
(-2.8)
A 		74
(-3)
A 		74.6
(-3)
A 		111.9
(-2.6)
A 		556.5
(1.9)
P 		667.7
(3)
P 		594
C 26.5
(-3)
A 		66
(-2.5)
A 		79.3
(-2.4)
A 		183.3
(-1.2)
A 		545.9
(3)
P 		491.3
(2.4)
P 		519
avr 79.8
(-2.9) 		67.7
(-3) 		74.8
(-2.9) 		139.6
(-2.3) 		532.4
(1.7) 		662.5
(3) 		595
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 28.1
(3)
A 		19.5
(0)
A 		25.3
(2)
A 		10.7
(-3)
A 		17
B 20.5
(-1.7)
A 		34.3
(3)
A 		28.9
(1.2)
A 		16.5
(-3)
A 		18
C 8.3
(-3)
A 		33.5
(3)
A 		32.4
(2.7)
A 		18.2
(-0.6)
A 		25
avr 19
(-1.3) 		29.1
(3) 		28.9
(2.9) 		15.1
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 239
1 2 3 4 5 6 range
A 21.9
(-2.8)
A 		22.5
(-2.8)
A 		15.3
(-3)
A 		31.4
(-2.5)
A 		149.3
(1.3)
P 		201.7
(3)
P 		186
B 32.7
(-2.6)
A 		24.6
(-2.8)
A 		18.1
(-3)
A 		29.6
(-2.7)
A 		226.1
(2.4)
P 		249
(3)
P 		231
C 9.8
(-3)
A 		20.1
(-2.6)
A 		20.2
(-2.6)
A 		36.9
(-2)
A 		176.7
(3)
P 		164.5
(2.6)
P 		167
avr 21.5
(-2.9) 		22.4
(-2.9) 		17.9
(-3) 		32.6
(-2.5) 		184
(2.3) 		205.1
(3) 		187
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177577_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9862
Sequence Type Exemplar sequence
Representative Public ID C04G2.8 NCBI
Target Description C04G2.8 /REP_DB=WormBase Gene ID /WP=CE05216 /TR=Q17626 /GB=CAA94670.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069436(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069436 NCBI Caenorhabditis elegans C04G2.8 (C04G2.8) mRNA, complete cds. 11/11 None
SNAP00000040138 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10110840:10111482:-1 11/11 None
GENEFINDER00000040153 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10110840:10111482:-1 11/11 None
C04G2.8 ENSEMBL cdna:known chromosome:CEL140:IV:10110795:10111549:-1 gene:C04G2.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10110845-10111488(-) 88.22 100.0
Public Domain and Genome References
Gene Title
Ensembl C04G2.8
Entrez Gene 177877 Entrez gene
SwissProt Q17626 EMBL-EBI
WormBase CE05216 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94670 Hypothetical protein C04G2.8 [Caenorhabditis elegans] ref|NP_501837.1| C04G2.8 [Caenorhabditis elegans] 5.0E-12
blast AAB42250 Hypothetical protein C10G11.9 [Caenorhabditis elegans] ref|NP_491812.1| C10G11.9 [Caenorhabditis elegans] 5.0E-9
blast AAB42294 Hypothetical protein T27A3.4 [Caenorhabditis elegans] ref|NP_491760.1| T27A3.4 [Caenorhabditis elegans] 5.0E-9
Sequence
Target Sequence 
>C. ELEGANS:177577_S_AT
aagaacaaacttcgtcctcgtgactcaaaaggacgcttcactcctcttgccaagaccaag
aggaccgtcgtgagccgctcccgctccagaagcgcatctcgtgctcgtcgaagccgtagt
gttgggagaccagcgagtcgcagaatctcagtccgttcggtctcaacgcacactgccaaa
tcgccaagcttggttgttgtgatctctccatcacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGAACAAACTTCGTCCTCGTGACT 331 153 34 Antisense
TCAAAAGGACGCTTCACTCCTCTTG 30 631 58 Antisense
TTCACTCCTCTTGCCAAGACCAAGA 535 687 70 Antisense
AGACCAAGAGGACCGTCGTGAGCCG 149 71 86 Antisense
GCTCGTCGAAGCCGTAGTGTTGGGA 78 285 136 Antisense
GAAGCCGTAGTGTTGGGAGACCAGC 476 343 143 Antisense
TGTTGGGAGACCAGCGAGTCGCAGA 109 563 153 Antisense
CGAGTCGCAGAATCTCAGTCCGTTC 337 249 167 Antisense
CACTGCCAAATCGCCAAGCTTGGTT 91 199 204 Antisense
CAAGCTTGGTTGTTGTGATCTCTCC 583 185 218 Antisense
TGGTTGTTGTGATCTCTCCATCACC 333 551 224 Antisense
Sequence Source Affymetrix Proprietary Database