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[177576_at]

Description F49H6.9 /REP_DB=WormBase Gene ID /WP=CE18718 /TR=Q9XV02 /GB=CAB04442.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 30      4grp_total > 44      6grp_cgc > 72      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 39.3
(-2.7)
A 		74.2
(3)
A 		46.6
(-1.5)
A 		37.5
(-3)
A 		37
B 48.9
(-0.4)
A 		57
(0.7)
A 		73.7
(3)
A 		29.4
(-3)
A 		44
C 83.7
(3)
A 		74.5
(2)
A 		28.5
(-3)
A 		64.8
(0.9)
A 		55
avr 57.3
(0.3) 		68.6
(3) 		49.6
(-1.6) 		43.9
(-3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 69
(2)
A 		41.4
(-1.7)
A 		76.5
(3)
P 		56.8
(0.3)
A 		32.1
(-3)
A 		47.6
(-0.9)
A 		44
B 53
(-0.7)
A 		99.2
(3)
A 		61.1
(-0.1)
M 		71
(0.7)
A 		39.9
(-1.8)
A 		25
(-3)
A 		74
C 11
(-2.8)
A 		110.2
(3)
A 		47.4
(-0.7)
A 		49.5
(-0.6)
A 		8.4
(-3)
A 		9.5
(-2.9)
A 		102
avr 44.3
(-1.2) 		83.6
(3) 		61.7
(0.7) 		59.1
(0.4) 		26.8
(-3) 		27.4
(-2.9) 		57
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 14.3
(2)
A 		16.1
(3)
A 		12.2
(0.8)
A 		5.5
(-3)
A 		11
B 15.6
(2.2)
A 		14.1
(1.3)
A 		17.1
(3)
A 		6.3
(-3)
A 		11
C 27.7
(3)
A 		21.4
(0.9)
A 		9.9
(-3)
A 		10.9
(-2.7)
A 		18
avr 19.2
(3) 		17.2
(2) 		13.1
(-0.2) 		7.6
(-3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 12.7
(-0.4)
A 		14.7
(1.3)
A 		16.7
(3)
P 		14.4
(1)
A 		9.7
(-3)
A 		11.6
(-1.4)
A 		7
B 18.5
(-0.7)
A 		33
(3)
A 		14.8
(-1.6)
M 		18.8
(-0.6)
A 		16.2
(-1.3)
A 		9.3
(-3)
A 		24
C 4.1
(-2.7)
A 		33.6
(3)
A 		12.1
(-1.2)
A 		10
(-1.6)
A 		2.7
(-3)
A 		3.2
(-2.9)
A 		31
avr 11.8
(-1.8) 		27.1
(3) 		14.5
(-1) 		14.4
(-1) 		9.5
(-2.5) 		8
(-3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177576_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13324
Sequence Type Exemplar sequence
Representative Public ID F49H6.9 NCBI
Target Description F49H6.9 /REP_DB=WormBase Gene ID /WP=CE18718 /TR=Q9XV02 /GB=CAB04442.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F49H6.9 ENSEMBL cdna:pseudogene chromosome:CEL140:V:17033316:17035350:1 gene:F49H6.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17033354-17035350(+) 100.0 100.0
Public Domain and Genome References
Ensembl F49H6.9
Sequence
Target Sequence 
>C. ELEGANS:177576_AT
atgatggcttccattgcgtggatccgagaaattttggaacctgaattaagtttaacagaa
atattaatggatattttaatgattagtttatttattattatttacccgcttcacatttta
caacaaacattccacctgttactgtttttattgagtttatttatttttgtgaacattgca
gtttgtttgataattccattgatttacattccaatcatgatcgatatgagaaaaaatagt
catctatattctcagcaacacatgtatctactcaagtacttgttcaatcagagctttctt
gtggcactaataaaattgatcacattaccattttgcttatcactcttccatttaaatagc
ccattgtcgtttgtgttttcaatgaccataggagatgctgtcacaacgcctctgattatc
caactttcatacttaaaatgcaattcgaacgaattgttctccctgtattctacatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGATGGCTTCCATTGCGTGGATCC 435 45 190 Antisense
TATTATTTACCCGCTTCACATTTTA 395 663 285 Antisense
CATTCCACCTGTTACTGTTTTTATT 541 217 317 Antisense
TAGTCATCTATATTCTCAGCAACAC 394 653 426 Antisense
TCAGAGCTTTCTTGTGGCACTAATA 590 623 477 Antisense
ATCACATTACCATTTTGCTTATCAC 586 27 508 Antisense
TTTGCTTATCACTCTTCCATTTAAA 199 669 521 Antisense
ATAGCCCATTGTCGTTTGTGTTTTC 125 23 545 Antisense
ATAGGAGATGCTGTCACAACGCCTC 435 21 577 Antisense
CAACGCCTCTGATTATCCAACTTTC 511 185 593 Antisense
AATTGTTCTCCCTGTATTCTACATT 513 177 641 Antisense
Sequence Source Affymetrix Proprietary Database