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[177572_at] 7TM chemoreceptor, srw family

Description C41G6.8 /REP_DB=WormBase Gene ID /WP=CE15705 /TR=O17661 /GB=CAB02833.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 18      6grp_total_sub > Hat      6grp_cgc > 64      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 189
1 2 3 4 range
A 74.8
(-0.9)
A 		20
(-3)
A 		24.7
(-2.8)
A 		173.2
(3)
P 		153
B 84.8
(-3)
A 		90.3
(-2)
A 		116.5
(3)
A 		96.6
(-0.8)
M 		32
C 29.6
(-3)
A 		156.6
(1.3)
A 		38.4
(-2.7)
A 		208.5
(3)
P 		179
avr 63.1
(-2.8) 		89
(-1.2) 		59.9
(-3) 		159.4
(3) 		100

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 143
1 2 3 4 5 6 range
A 60.7
(0.3)
A 		9.8
(-3)
A 		73
(1)
A 		12.3
(-2.8)
A 		103.6
(3)
A 		63.2
(0.4)
A 		94
B 51.9
(-0.1)
A 		52.9
(0)
A 		14.5
(-3)
A 		44.5
(-0.7)
A 		91.3
(3)
A 		42.5
(-0.8)
A 		77
C 16.8
(-2.6)
A 		150.5
(3)
A 		12.5
(-2.8)
A 		71.2
(-0.3)
A 		7.2
(-3)
A 		57.2
(-0.9)
A 		143
avr 43.1
(-1.4) 		71.1
(3) 		33.3
(-3) 		42.7
(-1.5) 		67.4
(2.4) 		54.3
(0.3) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 27.2
(3)
A 		4.4
(-3)
A 		6.4
(-2.5)
A 		25.3
(2.5)
P 		23
B 27
(3)
A 		22.3
(-1.4)
A 		27
(3)
A 		20.6
(-3)
M 		6
C 9.8
(-3)
A 		45
(3)
A 		13.4
(-2.4)
A 		35.2
(1.3)
P 		35
avr 21.3
(0) 		23.9
(1.4) 		15.6
(-3) 		27
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 11.2
(-1.3)
A 		3.5
(-2.9)
A 		15.9
(-0.3)
A 		3.1
(-3)
A 		31.3
(3)
A 		15.4
(-0.4)
A 		28
B 18.1
(-0.4)
A 		17.6
(-0.5)
A 		3.5
(-3)
A 		11.8
(-1.5)
A 		37.1
(3)
A 		15.8
(-0.8)
A 		34
C 6.2
(-2.5)
A 		45.9
(3)
A 		3.2
(-2.9)
A 		14.3
(-1.3)
A 		2.3
(-3)
A 		19.1
(-0.7)
A 		44
avr 11.8
(-1.4) 		22.3
(2.5) 		7.5
(-3) 		9.7
(-2.2) 		23.6
(3) 		16.8
(0.5) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177572_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13310
Sequence Type Exemplar sequence
Representative Public ID C41G6.8 NCBI
Target Description C41G6.8 /REP_DB=WormBase Gene ID /WP=CE15705 /TR=O17661 /GB=CAB02833.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074363(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074363 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-14) (srw-14) mRNA, complete cds. 10/11 None
GENEFINDER00000010448 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15226554:15230058:1 11/11 None
C41G6.8 ENSEMBL cdna:known chromosome:CEL140:V:15228536:15230058:1 gene:C41G6.8 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000010439 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15228535-15230048(+) 96.31 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-14
Ensembl C41G6.8
Entrez Gene 183384 Entrez gene
SwissProt O17661 EMBL-EBI
WormBase CE33764 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6955 immune response inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5576 extracellular region inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5149 interleukin-1 receptor binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02833 Hypothetical protein C41G6.8 [Caenorhabditis elegans] ref|NP_506764.2| Serpentine Receptor, class W family member (srw-14) [Caenorhabditis elegans] 0.0
blast CAB02832 Hypothetical protein C41G6.7 [Caenorhabditis elegans] ref|NP_506763.2| Serpentine Receptor, class W family member (srw-24) [Caenorhabditis elegans] 0.0
blast CAB02828 Hypothetical protein C41G6.3 [Caenorhabditis elegans] ref|NP_506766.1| Serpentine Receptor, class W family member (srw-15) [Caenorhabditis elegans] 1.0E-146
blast CAB02828 Hypothetical protein C41G6.3 [Caenorhabditis elegans] ref|NP_506766.1| Serpentine Receptor, class W family member (srw-15) [Caenorhabditis elegans] 1.0E-143
blast CAB60284 Hypothetical protein C41G6.15 [Caenorhabditis elegans] ref|NP_506767.1| Serpentine Receptor, class W family member (srw-13) [Caenorhabditis elegans] 1.0E-106
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506764.2 7 40-57,64-86,133-152,165-187,233-255,278-300,320-342
C41G6.8 7 40-57,64-86,133-152,165-187,233-255,278-300,320-342
GENEFINDER00000010448 12 47-69,79-98,142-164,210-232,252-274,410-427,434-456,503-522,535-557,603-625,648-670,690-712
Sequence
Target Sequence 
>C. ELEGANS:177572_AT
tcgatacgttcttgcaacacctgcaaatttgccccaaatgctgagtaactggggttttat
tgaattcattgtgaacttctcttctgcaattatttatccacttctcactatatcattgct
gatagctctactgaaaattaagcaacgaaggcaaaaccttcaaagaaaagacaccgaacc
tgctgataacacaaccaagttgatattattcatgacgatcacttttgttttatcagaggg
gttaagcggatttaatgcattactcatgtataatattgagaagattgaagaaaactgccc
agatttcgtgagcgccatctacaccgctgagtctttaattgcagtcctcaaaacattcaa
tgcattttcccattttttcgtttgctttttcctatcttcacaataccgaaatgttgccaa
atcgttgattattcctaagaaacaggtgcttgtcaatgtcaatgtaactgtcaatgtcaa
tgtcattgtcaatgtaactttgtataaaaattatttctcattactttcagaacaaaccag
tcgagctcactcgttcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGATACGTTCTTGCAACACCTGCA 625 603 645 Antisense
TGCAACACCTGCAAATTTGCCCCAA 275 577 657 Antisense
ATTTGCCCCAAATGCTGAGTAACTG 634 15 671 Antisense
ATCCACTTCTCACTATATCATTGCT 135 41 740 Antisense
AAAAGACACCGAACCTGCTGATAAC 175 133 810 Antisense
GAAAACTGCCCAGATTTCGTGAGCG 302 355 934 Antisense
CCATCTACACCGCTGAGTCTTTAAT 555 269 959 Antisense
GAGTCTTTAATTGCAGTCCTCAAAA 573 399 973 Antisense
CTTTTTCCTATCTTCACAATACCGA 603 221 1029 Antisense
AACAGGTGCTTGTCAATGTCAATGT 387 137 1085 Antisense
AAACCAGTCGAGCTCACTCGTTCTA 570 123 1178 Antisense
Sequence Source Affymetrix Proprietary Database