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[177569_s_at]

Description F35E2.6 /REP_DB=WormBase Gene ID /WP=CE17775 /TR=O62230 /GB=CAB04287.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 96      4grp_total > 60      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 5.8
(-2.9)
A 		5.3
(-3)
A 		34.4
(3)
A 		6.8
(-2.7)
A 		29
B 3
(-2.9)
A 		25.1
(3)
A 		3.9
(-2.7)
A 		2.8
(-3)
A 		22
C 32.2
(3)
A 		4.4
(-2.5)
A 		1.8
(-3)
A 		3.3
(-2.7)
A 		30
avr 13.7
(3) 		11.6
(1.7) 		13.4
(2.8) 		4.3
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 5.8
(-2.7)
A 		2.7
(-3)
A 		26.1
(-0.7)
A 		18.6
(-1.4)
A 		63.6
(3)
P 		30.1
(-0.3)
A 		61
B 19.6
(-1.2)
A 		9.8
(-2.4)
A 		5
(-3)
A 		24.6
(-0.5)
A 		5.2
(-3)
A 		52.7
(3)
A 		48
C 14.8
(0.9)
A 		21.3
(3)
A 		2.4
(-3)
A 		10.3
(-0.5)
A 		6.6
(-1.7)
A 		5.8
(-1.9)
A 		19
avr 13.4
(-2.3) 		11.3
(-3) 		11.2
(-3) 		17.8
(-0.8) 		25.1
(1.6) 		29.5
(3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 2.1
(-2.2)
A 		1.1
(-2.9)
A 		9
(3)
A 		1
(-3)
A 		8
B 1
(-2.6)
A 		6.2
(3)
A 		0.9
(-2.7)
A 		0.6
(-3)
A 		6
C 10.7
(3)
A 		1.3
(-2.6)
A 		0.6
(-3)
A 		0.6
(-3)
A 		10
avr 4.6
(3) 		2.9
(0.4) 		3.5
(1.3) 		0.7
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 1.1
(-3)
A 		1
(-3)
A 		5.7
(-1.5)
A 		4.7
(-1.8)
A 		19.2
(3)
P 		7.3
(-0.9)
A 		18
B 6.8
(-1.2)
A 		3.3
(-2.3)
A 		1.2
(-3)
A 		6.5
(-1.3)
A 		2.1
(-2.7)
A 		19.6
(3)
A 		18
C 5.5
(2)
A 		6.5
(3)
A 		0.6
(-3)
A 		2.1
(-1.5)
A 		2.1
(-1.5)
A 		1.9
(-1.7)
A 		6
avr 4.5
(-1.3) 		3.6
(-2.1) 		2.5
(-3) 		4.4
(-1.4) 		7.8
(1.5) 		9.6
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177569_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1974
Sequence Type Exemplar sequence
Representative Public ID F35E2.6 NCBI
Target Description F35E2.6 /REP_DB=WormBase Gene ID /WP=CE17775 /TR=O62230 /GB=CAB04287.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060583(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060583 NCBI Caenorhabditis elegans F35E2.6 (F35E2.6) mRNA, complete cds. 11/11 None
GENEFINDER00000041146 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11715065:11720630:-1 11/11 None
SNAP00000041130 ENSEMBL cdna:SNAP chromosome:CEL140:I:11716001:11716682:-1 10/11 None
F35E2.6 ENSEMBL cdna:known chromosome:CEL140:I:11715940:11720319:-1 gene:F35E2.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11715931-11720250(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F35E2.6
Entrez Gene 173055 Entrez gene
SwissProt O62230 EMBL-EBI
WormBase CE17775 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16747 transferase activity, transferring groups other than amino-acyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04287 Hypothetical protein F35E2.6 [Caenorhabditis elegans] ref|NP_492984.1| F35E2.6 [Caenorhabditis elegans] 0.0
blast CAB04285 Hypothetical protein F35E2.7 [Caenorhabditis elegans] ref|NP_492985.1| F35E2.7 [Caenorhabditis elegans] 0.0
blast CAB04108 Hypothetical protein F14B6.5 [Caenorhabditis elegans] ref|NP_493089.2| F14B6.5 [Caenorhabditis elegans] 0.0
blast CAB04287 Hypothetical protein F35E2.6 [Caenorhabditis elegans] ref|NP_492984.1| F35E2.6 [Caenorhabditis elegans] 1.0E-111
Protein Domains
Database ID Description E-Value
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 1.0E-126
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 2.3E-85
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 6.5E-38
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492984.1 10 36-58,78-100,141-163,176-195,200-217,250-272,277-299,304-326,336-355,362-381
F35E2.6 10 36-58,78-100,141-163,176-195,200-217,250-272,277-299,304-326,336-355,362-381
GENEFINDER00000041146 11 55-72,76-98,118-140,181-203,215-232,280-302,335-357,362-384,389-411,421-440,447-466
Sequence
Target Sequence 
>C. ELEGANS:177569_S_AT
atacaggggtctttttcggagtgcgaaatgattcataccactttcaatcgagaagaatgc
ataaattattacaaaagtttccgagatcgcgtaaaaaaagagaaacctgattacttattc
atagttatacggtatttaacggttggtgatccgatgccaaagaatgtcacagagtttaat
gatgacccaatctatcaatcaatgaaatctcagcttcttgaatttctgtcaggtacaaag
cgcatgatttacatcctgaatgccttgccatcacacaataacccattgacaagagagatt
atgccatggcttaaacaagggataacgcctattgaagttgagaaacgcttaggtcatgtg
gcaggcatgccgttcaaacaggcaacctatgaattagcccggaaaagatatgcggagcta
gtgaaagagtgcaatgggcgatgtggtctggtggattacaagcttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATACAGGGGTCTTTTTCGGAGTGCG 330 23 1504 Antisense
GATTCATACCACTTTCAATCGAGAA 181 431 1533 Antisense
AACGGTTGGTGATCCGATGCCAAAG 603 141 1641 Antisense
ATCTCAGCTTCTTGAATTTCTGTCA 173 33 1710 Antisense
GATTTACATCCTGAATGCCTTGCCA 273 429 1749 Antisense
CTTGCCATCACACAATAACCCATTG 254 219 1767 Antisense
GAAACGCTTAGGTCATGTGGCAGGC 552 357 1845 Antisense
TGGCAGGCATGCCGTTCAAACAGGC 314 545 1862 Antisense
CAGGCAACCTATGAATTAGCCCGGA 406 209 1882 Antisense
GAGTGCAATGGGCGATGTGGTCTGG 100 401 1930 Antisense
GTGGTCTGGTGGATTACAAGCTTGA 172 489 1946 Antisense
Sequence Source Affymetrix Proprietary Database