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[177568_at]

Description F33H1.4 /REP_DB=WormBase Gene ID /WP=CE02206 /TR=Q19991 /GB=CAA88699.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 18      6grp_total > 48      4grp_total > 23      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 100.5
(2.8)
P 		64
(-1.1)
P 		45.9
(-3)
A 		102.1
(3)
P 		56
B 69.2
(0.6)
P 		13.4
(-3)
A 		45.7
(-0.9)
P 		107
(3)
P 		94
C 127.1
(3)
P 		49.6
(-2.4)
A 		41.6
(-3)
P 		75.4
(-0.6)
P 		86
avr 98.9
(3) 		42.3
(-3) 		44.4
(-2.8) 		94.8
(2.6) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 93.9
(2.5)
P 		68
(0.4)
M 		27.4
(-3)
A 		36.6
(-2.2)
A 		51.6
(-1)
P 		99.8
(3)
P 		72
B 68.7
(0.8)
P 		83.6
(1.9)
P 		43.7
(-1)
A 		15
(-3)
M 		50.7
(-0.5)
P 		99.1
(3)
P 		84
C 68
(-0.5)
P 		96.5
(1.3)
P 		27.3
(-3)
A 		57.4
(-1.1)
A 		65
(-0.7)
P 		124.7
(3)
P 		97
avr 76.9
(0.5) 		82.7
(1) 		32.8
(-3) 		36.3
(-2.7) 		55.8
(-1.2) 		107.9
(3) 		75
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 36.6
(3)
P 		13.9
(-2.5)
P 		12
(-3)
A 		14.9
(-2.3)
P 		25
B 22.1
(2.8)
P 		3.3
(-3)
A 		10.6
(-0.8)
P 		22.8
(3)
P 		20
C 42.1
(3)
P 		14.3
(-2.7)
A 		14.5
(-2.6)
P 		12.7
(-3)
P 		29
avr 33.6
(3) 		10.5
(-3) 		12.4
(-2.5) 		16.8
(-1.4) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 17.3
(0.7)
P 		24.2
(3)
M 		6
(-3)
A 		9.3
(-1.9)
A 		15.6
(0.1)
P 		24.3
(3)
P 		18
B 23.9
(0.6)
P 		27.8
(1.3)
P 		10.6
(-1.8)
A 		4
(-3)
M 		20.6
(0)
P 		37
(3)
P 		33
C 25.2
(0.2)
P 		29.4
(0.9)
P 		6.9
(-3)
A 		11.5
(-2.2)
A 		21
(-0.6)
P 		41.7
(3)
P 		35
avr 22.1
(0.2) 		27.1
(1.4) 		7.8
(-3) 		8.3
(-2.9) 		19.1
(-0.4) 		34.3
(3) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177568_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3170
Sequence Type Exemplar sequence
Representative Public ID F33H1.4 NCBI
Target Description F33H1.4 /REP_DB=WormBase Gene ID /WP=CE02206 /TR=Q19991 /GB=CAA88699.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063793(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063793 NCBI Caenorhabditis elegans F33H1.4 (F33H1.4) mRNA, complete cds. 11/11 None
SNAP00000027290 ENSEMBL cdna:SNAP chromosome:CEL140:II:10174585:10179573:1 11/11 None
GENEFINDER00000027293 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10174585:10179573:1 11/11 None
F33H1.4 ENSEMBL cdna:known chromosome:CEL140:II:10174792:10180037:1 gene:F33H1.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10174788-10179570(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F33H1.4
Entrez Gene 174580 Entrez gene
SwissProt Q19991 EMBL-EBI
WormBase CE02206 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA88699 Hypothetical protein F33H1.4 [Caenorhabditis elegans] ref|NP_496194.1| F33H1.4 [Caenorhabditis elegans] 0.0
blast CAE57885 Hypothetical protein CBG00931 [Caenorhabditis briggsae] 0.0
blast CAE57852 Hypothetical protein CBG00889 [Caenorhabditis briggsae] 3.0E-33
Sequence
Target Sequence 
>C. ELEGANS:177568_AT
gatttggtgacactattacggatccaattgagctggaaagattccgaaaagataatttcg
atcagcaatttgacaaggtccaaattgtctttggaatcaagaaaaacaacgagccagctt
acattttgcttatggaaaatgagaagatggatttaaaaatggcacaagaaatggctggca
aagtgcaaacagaggaagatacttcacaagaaagtcgattcgatagattagttggaagag
atgaaactccacaattcgaggaatctgaaccatctacaatgttccgcgaagaaaccaaac
cgatggctcttgaattcccacaacagattgtagaagaagaagttgaagaaatggaagaag
ttccagtggagactgagttcattccaacatatgacgccaataatccggatcatgtgctca
ttgatgaaaatgaaattatgaacgacggcaactacgagatgatccaggagggcgagtatc
aagagattgaggaagatagaactgtccgttacctcactgaagatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTTGGTGACACTATTACGGATCC 641 427 3563 Antisense
AACGAGCCAGCTTACATTTTGCTTA 311 145 3670 Antisense
AATTCGAGGAATCTGAACCATCTAC 702 175 3815 Antisense
AACCATCTACAATGTTCCGCGAAGA 694 147 3830 Antisense
GAAACCAAACCGATGGCTCTTGAAT 52 359 3853 Antisense
GGCTCTTGAATTCCCACAACAGATT 197 539 3867 Antisense
GAGACTGAGTTCATTCCAACATATG 469 393 3931 Antisense
GACGCCAATAATCCGGATCATGTGC 404 381 3955 Antisense
GACGGCAACTACGAGATGATCCAGG 296 377 4006 Antisense
AGATAGAACTGTCCGTTACCTCACT 629 59 4056 Antisense
CTGTCCGTTACCTCACTGAAGATGA 349 219 4064 Antisense
Sequence Source Affymetrix Proprietary Database