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[177567_s_at]

Description D2030.3 /REP_DB=WormBase Gene ID /WP=CE09080 /TR=P90790 /GB=CAA98117.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 59      6grp_high1_10_10 > 94      4grp_highest_8_8 > 37      4grp_high_8_8 > 0      6grp_highest_nonorm > 64      6grp_total > 85      4grp_total > 07      6grp_highest_sub > In      6grp_high1_sub > In      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 553
1 2 3 4 range
A 910.8
(0.8)
P 		762.4
(-3)
P 		913.8
(0.8)
P 		998.7
(3)
P 		236
B 1074.9
(3)
P 		662.4
(-3)
P 		685.3
(-2.7)
P 		1020.4
(2.2)
P 		413
C 1077.9
(3)
P 		524.8
(-3)
P 		933.8
(1.4)
P 		1055
(2.8)
P 		553
avr 1021.2
(2.9) 		649.9
(-3) 		844.3
(0.1) 		1024.7
(3) 		375

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 525
1 2 3 4 5 6 range
A 589.7
(-3)
P 		802.3
(-0.1)
P 		828.5
(0.2)
P 		886.9
(1)
P 		754.8
(-0.8)
P 		1034.8
(3)
P 		445
B 509.7
(-3)
P 		776.2
(0.4)
P 		567.1
(-2.3)
P 		741.3
(-0)
P 		906.5
(2.1)
P 		974
(3)
P 		464
C 510.4
(-3)
P 		739
(-0.4)
P 		877.5
(1.2)
P 		1034.1
(3)
P 		979.2
(2.4)
P 		893
(1.4)
P 		524
avr 536.6
(-3) 		772.5
(0.3) 		757.7
(0.1) 		887.4
(1.9) 		880.2
(1.8) 		967.3
(3) 		431
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 211
1 2 3 4 range
A 331.6
(3)
P 		165.5
(-2.4)
P 		238.9
(0)
P 		146.2
(-3)
P 		185
B 342.8
(3)
P 		163.6
(-2.8)
P 		158.8
(-3)
P 		217.4
(-1.1)
P 		184
C 356.8
(3)
P 		150.9
(-3)
P 		325.4
(2.1)
P 		177.9
(-2.2)
P 		206
avr 343.7
(3) 		160
(-3) 		241
(-0.4) 		180.5
(-2.3) 		184

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 260
1 2 3 4 5 6 range
A 108.7
(-3)
P 		285.4
(3)
P 		180.4
(-0.6)
P 		224.9
(0.9)
P 		227.8
(1)
P 		252
(1.9)
P 		177
B 177.3
(-2)
P 		258.4
(0.1)
P 		137.7
(-3)
P 		196.3
(-1.5)
P 		368.3
(3)
P 		363.2
(2.9)
P 		231
C 189.2
(-3)
P 		225.5
(-1.3)
P 		223.3
(-1.4)
P 		208
(-2.1)
P 		316.8
(3)
P 		298.9
(2.2)
P 		128
avr 158.4
(-3) 		256.4
(1) 		180.5
(-2.1) 		209.7
(-0.9) 		304.3
(3) 		304.7
(3) 		146
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177567_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2531
Sequence Type Exemplar sequence
Representative Public ID D2030.3 NCBI
Target Description D2030.3 /REP_DB=WormBase Gene ID /WP=CE09080 /TR=P90790 /GB=CAA98117.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059717(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059717 NCBI Caenorhabditis elegans D2030.3 (D2030.3) mRNA, complete cds. 11/11 None
SNAP00000031272 ENSEMBL cdna:SNAP chromosome:CEL140:I:7586746:7588958:-1 11/11 None
GENEFINDER00000031284 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7586746:7588958:-1 11/11 None
D2030.3.3 ENSEMBL cdna:known chromosome:CEL140:I:7586312:7588960:-1 gene:D2030.3 11/11 None
D2030.3.1 ENSEMBL cdna:known chromosome:CEL140:I:7586639:7588960:-1 gene:D2030.3 11/11 None
D2030.3.2 ENSEMBL cdna:known chromosome:CEL140:I:7586639:7588962:-1 gene:D2030.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7586676-7588889(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D2030.3
Entrez Gene 172512 Entrez gene
SwissProt P90790 EMBL-EBI
WormBase CE09080 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98117 Hypothetical protein D2030.3 [Caenorhabditis elegans] ref|NP_492118.1| D2030.3 [Caenorhabditis elegans] 0.0
blast CAE66625 Hypothetical protein CBG11961 [Caenorhabditis briggsae] 1.0E-130
Sequence
Target Sequence 
>C. ELEGANS:177567_S_AT
gaaatctactttccagcattatcgaatcggcggcttctctcattaagccagaagtgtttg
ccactgttcaaaaagcagtttgtgagtctgccattatgcatccggatagttcaatctatc
ttcaattgcttgctgcattccttactttgaacaatgaatatgttccatctccattgcaag
tcgctcgagttatttcatcaagaactcgaaatacttctgagcattctcatagattaagag
ctctttgcaatgttgcatcccgccctagaactacggatcttgcaaatgtgaaagccaaga
aaacacttgttctcaaagaggaaaatactattcaagctccaactgccgcgtccgaagatt
tgaaggaaaaggaagaagtggagcaagaatttgaagaaatggaaacagaagataaggaag
aggagattgttccagtggtggtagagaagaaaatagaagaggttccagaagcttcatcca
gaaaaaagaaaaatagtgagagcagtactacagccacttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAATCTACTTTCCAGCATTATCGA 155 363 911 Antisense
AGCATTATCGAATCGGCGGCTTCTC 223 79 925 Antisense
GTGAGTCTGCCATTATGCATCCGGA 458 481 992 Antisense
TCTTCAATTGCTTGCTGCATTCCTT 214 617 1029 Antisense
ATATGTTCCATCTCCATTGCAAGTC 403 21 1068 Antisense
AAGTCGCTCGAGTTATTTCATCAAG 85 159 1088 Antisense
TCCCGCCCTAGAACTACGGATCTTG 99 593 1168 Antisense
AATACTATTCAAGCTCCAACTGCCG 8 173 1234 Antisense
CAACTGCCGCGTCCGAAGATTTGAA 566 187 1250 Antisense
AGAGGTTCCAGAAGCTTCATCCAGA 41 69 1368 Antisense
TGAGAGCAGTACTACAGCCACTTCA 544 567 1407 Antisense
Sequence Source Affymetrix Proprietary Database