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[177566_at]

Description T05B9.2 /REP_DB=WormBase Gene ID /WP=CE02311 /TR=Q22214 /GB=CAA88961.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 29      4grp_total > 02      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 193
1 2 3 4 range
A 27.2
(-3)
A 		35.6
(-2.7)
A 		52.9
(-2.1)
A 		191.2
(3)
P 		164
B 41.8
(-2.4)
A 		35.3
(-2.7)
A 		25.3
(-3)
A 		199.6
(3)
P 		174
C 38.3
(-1.9)
A 		6.2
(-3)
A 		33.3
(-2.1)
A 		185.5
(3)
P 		179
avr 35.8
(-2.6) 		25.7
(-3) 		37.2
(-2.6) 		192.1
(3) 		166

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 22.3
(-2)
A 		42.3
(1.2)
A 		53.4
(3)
A 		38
(0.5)
A 		16.1
(-3)
A 		30.9
(-0.6)
A 		37
B 44.9
(-0.8)
A 		37.9
(-2.3)
A 		34.4
(-3)
A 		62.7
(3)
A 		54.9
(1.3)
P 		51.9
(0.7)
A 		28
C 47.4
(3)
A 		35.7
(1.4)
A 		9.3
(-2.3)
A 		4
(-3)
A 		47.4
(3)
A 		25.9
(0)
A 		43
avr 38.2
(1.9) 		38.6
(2.2) 		32.4
(-3) 		34.9
(-0.9) 		39.5
(3) 		36.2
(0.2) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 9.9
(-2.3)
A 		7.7
(-3)
A 		13.8
(-1.2)
A 		28
(3)
P 		20
B 13.3
(-1.8)
A 		8.7
(-2.5)
A 		5.9
(-3)
A 		42.5
(3)
P 		37
C 12.7
(-0.8)
A 		1.8
(-3)
A 		11.6
(-1)
A 		31.3
(3)
P 		30
avr 12
(-1.7) 		6.1
(-3) 		10.4
(-2.1) 		33.9
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 4.1
(-3)
A 		15
(3)
A 		11.6
(1.1)
A 		9.6
(0)
A 		4.9
(-2.6)
A 		7.5
(-1.1)
A 		11
B 15.6
(0.1)
A 		12.6
(-1.2)
A 		8.3
(-3)
A 		16.6
(0.6)
A 		22.3
(3)
P 		19.4
(1.8)
A 		14
C 17.6
(3)
A 		10.9
(0.6)
A 		2.4
(-2.4)
A 		0.8
(-3)
A 		15.3
(2.2)
A 		8.7
(-0.2)
A 		17
avr 12.4
(1.4) 		12.8
(1.8) 		7.4
(-3) 		9
(-1.6) 		14.2
(3) 		11.9
(1) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177566_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3798
Sequence Type Exemplar sequence
Representative Public ID T05B9.2 NCBI
Target Description T05B9.2 /REP_DB=WormBase Gene ID /WP=CE02311 /TR=Q22214 /GB=CAA88961.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064007(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064007 NCBI Caenorhabditis elegans T05B9.2 (T05B9.2) mRNA, complete cds. 11/11 None
SNAP00000021152 ENSEMBL cdna:SNAP chromosome:CEL140:II:11256974:11258159:1 11/11 None
GENEFINDER00000021156 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11255742:11258159:1 11/11 None
T05B9.2 ENSEMBL cdna:known chromosome:CEL140:II:11257034:11258159:1 gene:T05B9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11257030-11258156(+) 94.01 100.0
Public Domain and Genome References
Gene Title
Ensembl T05B9.2
Entrez Gene 188109 Entrez gene
SwissProt Q22214 EMBL-EBI
WormBase CE02311 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88961 Hypothetical protein T05B9.2 [Caenorhabditis elegans] ref|NP_496408.1| T05B9.2 [Caenorhabditis elegans] 9.0E-93
blast CAA88961 Hypothetical protein T05B9.2 [Caenorhabditis elegans] ref|NP_496408.1| T05B9.2 [Caenorhabditis elegans] 1.0E-92
blast CAA88961 Hypothetical protein T05B9.2 [Caenorhabditis elegans] ref|NP_496408.1| T05B9.2 [Caenorhabditis elegans] 2.0E-92
blast CAE59543 Hypothetical protein CBG02939 [Caenorhabditis briggsae] 9.0E-90
blast CAE59543 Hypothetical protein CBG02939 [Caenorhabditis briggsae] 1.0E-89
blast CAE59543 Hypothetical protein CBG02939 [Caenorhabditis briggsae] 6.0E-83
Sequence
Target Sequence 
>C. ELEGANS:177566_AT
aatcacggagcacgtctggaaagctcatcgctaaaccgaacactatggtcggattctgcc
aagatgatgaagatgaggtacggtatcgccttcaagatcatgtaatagttggtccaatcg
tgatggaggctgatgatgtgccagatggagaagagtgcaaggaaaactgtcggaaggtcg
gtgcattgtactactcctggaggcccaacagcgacaatcaacggagtaacgttgtaccag
tagaagaagaagaagatgatgaagaacaagaagttctaggtcactgtgaatgcatcagca
cgatgaacgaactacgattagaatacgacgcgttttccggtttcatcccaattccaaagc
acaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCACGGAGCACGTCTGGAAAGCT 672 169 143 Antisense
GAAAGCTCATCGCTAAACCGAACAC 55 357 161 Antisense
AACACTATGGTCGGATTCTGCCAAG 88 135 181 Antisense
GAGGTACGGTATCGCCTTCAAGATC 128 403 217 Antisense
GGAGGCTGATGATGTGCCAGATGGA 385 515 267 Antisense
GGAAGGTCGGTGCATTGTACTACTC 696 529 314 Antisense
TGTACTACTCCTGGAGGCCCAACAG 163 555 329 Antisense
GGCCCAACAGCGACAATCAACGGAG 274 541 344 Antisense
GGTCACTGTGAATGCATCAGCACGA 679 503 421 Antisense
GATTAGAATACGACGCGTTTTCCGG 49 429 458 Antisense
GTTTCATCCCAATTCCAAAGCACAA 79 451 482 Antisense
Sequence Source Affymetrix Proprietary Database