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[177565_at]

Description R07B5.7 /REP_DB=WormBase Gene ID /WP=CE06261 /TR=Q21788 /GB=CAA96667.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 03      4grp_total > 37      6grp_cgc > 52      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 55
(3)
A 		37.2
(0.7)
A 		8.3
(-3)
A 		33
(0.2)
A 		47
B 53.1
(2.8)
M 		54.8
(3)
A 		6.6
(-3)
A 		9.9
(-2.6)
A 		48
C 45.2
(3)
A 		36
(1.4)
A 		11
(-3)
A 		31
(0.5)
A 		34
avr 51.1
(3) 		42.7
(1.8) 		8.6
(-3) 		24.6
(-0.7) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 19.2
(-0.6)
A 		28.9
(0.9)
A 		34.7
(1.7)
A 		2.3
(-3)
A 		43.7
(3)
A 		5
(-2.6)
A 		41
B 47.9
(3)
A 		41.5
(1.8)
A 		16
(-3)
A 		21.6
(-1.9)
A 		37.1
(1)
A 		30.8
(-0.2)
A 		32
C 34
(0.5)
A 		40.5
(1.2)
A 		16.7
(-1.6)
A 		55.3
(3)
P 		5
(-3)
A 		12.7
(-2.1)
A 		50
avr 33.7
(2) 		37
(3) 		22.5
(-1.2) 		26.4
(-0.1) 		28.6
(0.6) 		16.2
(-3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 20
(3)
A 		8.1
(-1)
A 		2.2
(-3)
A 		4.8
(-2.1)
A 		18
B 16.9
(3)
M 		13.5
(1.7)
A 		1.5
(-3)
A 		2.1
(-2.8)
A 		15
C 15
(3)
A 		10.4
(0.5)
A 		3.8
(-3)
A 		5.2
(-2.3)
A 		11
avr 17.3
(3) 		10.7
(0.3) 		2.5
(-3) 		4
(-2.4) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 3.5
(-1.6)
A 		10.3
(1.6)
A 		7.6
(0.3)
A 		0.6
(-3)
A 		13.2
(3)
A 		1.2
(-2.7)
A 		13
B 16.7
(3)
A 		13.8
(1.6)
A 		3.9
(-3)
A 		5.7
(-2.2)
A 		15.1
(2.3)
A 		11.5
(0.6)
A 		13
C 12.6
(3)
A 		12.4
(2.9)
A 		4.2
(-1.6)
A 		11.1
(2.2)
P 		1.6
(-3)
A 		4.2
(-1.6)
A 		11
avr 10.9
(1.9) 		12.2
(3) 		5.2
(-3) 		5.8
(-2.5) 		10
(1.1) 		5.6
(-2.7) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177565_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11669
Sequence Type Exemplar sequence
Representative Public ID R07B5.7 NCBI
Target Description R07B5.7 /REP_DB=WormBase Gene ID /WP=CE06261 /TR=Q21788 /GB=CAA96667.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073140(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073140 NCBI Caenorhabditis elegans Serpentine Receptor, class U family member (sru-8) (sru-8) mRNA, complete cds. 11/11 None
SNAP00000041730 ENSEMBL cdna:SNAP chromosome:CEL140:V:9846448:9848743:1 10/11 None
GENEFINDER00000041734 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9846448:9848743:1 11/11 None
R07B5.7 ENSEMBL cdna:known chromosome:CEL140:V:9846448:9848743:1 gene:R07B5.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9846533-9848743(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol sru-8
Ensembl R07B5.7
Entrez Gene 187654 Entrez gene
SwissProt Q21788 EMBL-EBI
WormBase CE34079 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA96667 Hypothetical protein R07B5.7 [Caenorhabditis elegans] ref|NP_505541.2| Serpentine Receptor, class U family member (sru-8) [Caenorhabditis elegans] 0.0
blast CAE72268 Hypothetical protein CBG19388 [Caenorhabditis briggsae] 1.0E-157
blast CAA96667 Hypothetical protein R07B5.7 [Caenorhabditis elegans] ref|NP_505541.2| Serpentine Receptor, class U family member (sru-8) [Caenorhabditis elegans] 3.0E-77
blast CAE74028 Hypothetical protein CBG21677 [Caenorhabditis briggsae] 2.0E-76
Protein Domains
Database ID Description E-Value
Pfam IPR003839 EMBL-EBI Protein of unknown function DUF215 1.2E-90
Pfam IPR003839 EMBL-EBI Protein of unknown function DUF215 4.7E-75
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505541.2 6 33-55,75-97,120-142,163-185,213-235,261-283
R07B5.7 6 33-55,75-97,120-142,163-185,213-235,261-283
SNAP00000041730 4 36-58,73-95,114-136,151-173
GENEFINDER00000041734 6 33-55,75-97,120-142,163-185,213-235,261-283
Sequence
Target Sequence 
>C. ELEGANS:177565_AT
gccgattacatgatgctccgtttaccagcaacaggattcttcactgcatattgtgcaact
gtatacccaaatcaatacatcaagctcatattctttcttacgttttactttaattattct
gcaatggtttttccatttcttttgtgccttcttcgattaattcttataatgtttccaaac
actcatcaaaaaatcaacagtcgattgctggcagtctcagttcccataactttaatctac
ccaattatattcacattctttcttattccagctgtaggttactgtagacagcttggaggt
ccatatccattcggttctgtttcagtatactattctggcggtgcattagggatgcgtaat
tcagtgtttcactttttcaatacagtattctggatggctgcatgtttacttgtattgtac
cttaaagttcctgcatacacgtattatatgatgataatccgtccattcggaaacgattgt
gaaactgtcattgttccatggatcttctatttaacccatccagtattcaaaaaccaagat
ggttcagtcatttcgataaccgtcattcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCGATTACATGATGCTCCGTTTAC 230 283 403 Antisense
GCTCATATTCTTTCTTACGTTTTAC 418 301 486 Antisense
TGGTTTTTCCATTTCTTTTGTGCCT 372 551 527 Antisense
TTTGTGCCTTCTTCGATTAATTCTT 117 667 543 Antisense
AGTCGATTGCTGGCAGTCTCAGTTC 680 59 601 Antisense
TTCACATTCTTTCTTATTCCAGCTG 386 687 652 Antisense
GTCCATATCCATTCGGTTCTGTTTC 255 477 701 Antisense
GGGATGCGTAATTCAGTGTTTCACT 580 495 751 Antisense
GAAACTGTCATTGTTCCATGGATCT 593 357 883 Antisense
GATCTTCTATTTAACCCATCCAGTA 107 421 903 Antisense
GTCATTTCGATAACCGTCATTCAAT 667 467 949 Antisense
Sequence Source Affymetrix Proprietary Database