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[177564_at] WD domain, G-beta repeat

Description F02E9.9 /REP_DB=WormBase Gene ID /WP=CE23629 /TR=Q9U3K7 /GB=CAB54212.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 24      6grp_high1_10_10 > 41      4grp_highest_8_8 > 17      4grp_high_8_8 > 61      6grp_highest_nonorm > 72      6grp_total > 31      4grp_total > 59      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 342
1 2 3 4 range
A 377.5
(0.5)
P 		486.6
(2.4)
P 		519.2
(3)
P 		180.9
(-3)
P 		338
B 352.2
(0.6)
P 		391.3
(1.4)
P 		463.5
(3)
P 		190.9
(-3)
P 		273
C 351.4
(-0.1)
P 		466.7
(2)
P 		522.6
(3)
P 		194.1
(-3)
P 		329
avr 360.4
(0.3) 		448.2
(2) 		501.8
(3) 		188.6
(-3) 		313

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 327
1 2 3 4 5 6 range
A 392.9
(0)
P 		490
(3)
P 		460.1
(2.1)
P 		459.4
(2.1)
P 		294.9
(-3)
P 		349.5
(-1.3)
P 		195
B 459.8
(-0.6)
P 		490.6
(0.1)
P 		622.1
(3)
P 		477.7
(-0.2)
P 		436.9
(-1.1)
P 		350.1
(-3)
P 		272
C 419.1
(-0.1)
P 		436.6
(0.4)
P 		516.4
(3)
P 		351.9
(-2.3)
P 		364.4
(-1.9)
P 		329.1
(-3)
P 		187
avr 423.9
(-0.4) 		472.4
(1.1) 		532.9
(3) 		429.7
(-0.3) 		365.4
(-2.3) 		342.9
(-3) 		190
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 156
1 2 3 4 range
A 137.5
(3)
P 		105.6
(1.3)
P 		135.7
(2.9)
P 		26.5
(-3)
P 		111
B 112.3
(3)
P 		96.6
(1.7)
P 		107.4
(2.6)
P 		40.7
(-3)
P 		72
C 116.3
(0.4)
P 		134.2
(1.1)
P 		182.1
(3)
P 		32.7
(-3)
P 		149
avr 122
(1.9) 		112.1
(1.4) 		141.7
(3) 		33.3
(-3) 		108

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 107
1 2 3 4 5 6 range
A 72.4
(-3)
P 		174.3
(3)
P 		100.2
(-1.4)
P 		116.5
(-0.4)
P 		89
(-2)
P 		85.1
(-2.3)
P 		102
B 160
(0.9)
P 		163.3
(1.3)
P 		151.1
(-0.1)
P 		126.5
(-3)
P 		177.5
(3)
P 		130.6
(-2.5)
P 		51
C 155.4
(3)
P 		133.2
(1.4)
P 		131.4
(1.3)
P 		70.8
(-3)
P 		117.9
(0.3)
P 		110.2
(-0.2)
P 		85
avr 129.3
(-0.2) 		156.9
(3) 		127.6
(-0.4) 		104.6
(-3) 		128.1
(-0.3) 		108.6
(-2.5) 		52
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177564_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.672
Sequence Type Exemplar sequence
Representative Public ID F02E9.9 NCBI
Target Description F02E9.9 /REP_DB=WormBase Gene ID /WP=CE23629 /TR=Q9U3K7 /GB=CAB54212.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059887(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059887 NCBI Caenorhabditis elegans F02E9.9 (F02E9.9) mRNA, complete cds. 10/11 None
SNAP00000012711 ENSEMBL cdna:SNAP chromosome:CEL140:I:8438223:8441105:-1 10/11 None
GENEFINDER00000012719 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8438223:8441457:-1 10/11 None
F02E9.9.3 ENSEMBL cdna:known chromosome:CEL140:I:8438076:8441105:-1 gene:F02E9.9 10/11 None
F02E9.9.2 ENSEMBL cdna:known chromosome:CEL140:I:8438076:8443989:-1 gene:F02E9.9 10/11 None
F02E9.9.1 ENSEMBL cdna:known chromosome:CEL140:I:8438076:8443990:-1 gene:F02E9.9 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8440527-8440987(-) 100.0 100.0
Public Domain and Genome References
Gene Title WD domain, G-beta repeat
Ensembl F02E9.9
Entrez Gene 172631 Entrez gene
SwissProt Q9U3K7 EMBL-EBI
WormBase CE32352 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1583838_AT similar to dipeptidylpeptidase III isoform 1 cfa
CANINE_2:CFA.10801.1.A1_AT similar to dipeptidylpeptidase III isoform 1 cfa
CANINE_2:CFAAFFX.19628.1.S1_S_AT similar to dipeptidylpeptidase III isoform 1 cfa
DROSOPHILA_2:1637532_S_AT Dipeptidyl aminopeptidase III dm
DROSGENOME1:153049_AT Dipeptidyl aminopeptidase III dm
HG-U133_PLUS_2:232510_S_AT dipeptidylpeptidase 3 hs
HG-U133B:232510_S_AT dipeptidylpeptidase 3 hs
HG-U133_PLUS_2:218567_X_AT dipeptidylpeptidase 3 hs
HG-U133A:218567_X_AT dipeptidylpeptidase 3 hs
HG-FOCUS:218567_X_AT dipeptidylpeptidase 3 hs
HG-U133A_2:218567_X_AT dipeptidylpeptidase 3 hs
HU35KSUBA:T35341_S_AT dipeptidylpeptidase 3 hs
HU35KSUBB:RC_R44817_AT dipeptidylpeptidase 3 hs
U133_X3P:G11342681_3P_A_AT dipeptidylpeptidase 3 hs
U133_X3P:HS.306594.0.S1_3P_S_AT dipeptidylpeptidase 3 hs
HG-U95B:57112_AT dipeptidylpeptidase 3 hs
MOE430A:1431594_AT dipeptidylpeptidase 3 mm
MOUSE430_2:1431594_AT dipeptidylpeptidase 3 mm
MOUSE430A_2:1431594_AT dipeptidylpeptidase 3 mm
MG-U74AV2:104306_AT dipeptidylpeptidase 3 mm
MOE430A:1448215_A_AT dipeptidylpeptidase 3 mm
MOUSE430A_2:1448215_A_AT dipeptidylpeptidase 3 mm
MOUSE430_2:1448215_A_AT dipeptidylpeptidase 3 mm
MU19KSUBB:TC31330_AT Dipeptidylpeptidase 3 (Dpp3), mRNA mm
MU19KSUBC:TC36866_AT Dipeptidylpeptidase 3 (Dpp3), mRNA mm
RG-U34A:D89340_AT dipeptidylpeptidase 3 rn
RAE230A:1367966_AT dipeptidylpeptidase 3 rn
RAT230_2:1367966_AT dipeptidylpeptidase 3 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5737 cytoplasm inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
17039 dipeptidyl-peptidase III activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB54212 Hypothetical protein F02E9.9 [Caenorhabditis elegans] ref|NP_492288.2| F02E9.9 [Caenorhabditis elegans] 0.0
blast CAE67279 Hypothetical protein CBG12727 [Caenorhabditis briggsae] 0.0
blast T20512 hypothetical protein F02E9.6 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005317 EMBL-EBI Peptidase M49 5.1E-125
Pfam IPR005317 EMBL-EBI Peptidase M49 5.6E-77
Pfam IPR005317 EMBL-EBI Peptidase M49 1.0E-126
Pfam IPR005317 EMBL-EBI Peptidase M49 1.0E-126
Pfam IPR005317 EMBL-EBI Peptidase M49 3.0E-76
Sequence
Target Sequence 
>C. ELEGANS:177564_AT
gtagcctctacataattccaaacgaaacaccagtttgtcagctagatgcggctgatgctt
tcaagacgttatctgagaaggagaaaaagtattctcattacgtggccaaggcatcttttg
acggtgctcttgcagttttcttgcaagtttcaccggaatctgcgccgattttctacgttt
tgtacagacttttcaaatcggagtctgtcgagcagttgaaggaaaaggcactttccgtag
gattcaccgatgctgaatggcaagcttttcttgtttatgctgcagctttttattccaatt
ctggaaattataagggattcggagatacaaaaatcgtcccaggtgtcgagcaggtaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAGCCTCTACATAATTCCAAACGA 86 457 26 Antisense
ACACCAGTTTGTCAGCTAGATGCGG 67 109 52 Antisense
GATGCGGCTGATGCTTTCAAGACGT 648 413 70 Antisense
ATTCTCATTACGTGGCCAAGGCATC 574 3 116 Antisense
AAGGCATCTTTTGACGGTGCTCTTG 351 161 133 Antisense
GCAAGTTTCACCGGAATCTGCGCCG 453 321 168 Antisense
TGCGCCGATTTTCTACGTTTTGTAC 364 549 186 Antisense
AATCGGAGTCTGTCGAGCAGTTGAA 538 167 221 Antisense
CTTTCCGTAGGATTCACCGATGCTG 169 223 256 Antisense
CTTTTCTTGTTTATGCTGCAGCTTT 171 223 290 Antisense
ATCGTCCCAGGTGTCGAGCAGGTAA 584 35 358 Antisense
Sequence Source Affymetrix Proprietary Database