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[177563_s_at]

Description T01E8.5 /REP_DB=WormBase Gene ID /WP=CE18165 /TR=Q20749 /GB=CAA88749.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 50      4grp_highest_8_8 > 42      4grp_high_8_8 > 48      6grp_highest_nonorm > 75      6grp_total > 40      4grp_total > 63      6grp_highest_sub > 04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 389
1 2 3 4 range
A 863
(3)
P 		604.9
(-2.3)
P 		670.1
(-0.9)
P 		569.4
(-3)
P 		294
B 768.8
(3)
P 		579.2
(-2)
P 		611.2
(-1.1)
P 		539.9
(-3)
P 		229
C 842.4
(3)
P 		592.4
(-1.1)
P 		671.6
(0.2)
P 		474.5
(-3)
P 		368
avr 824.7
(3) 		592.2
(-1.7) 		651
(-0.5) 		527.9
(-3) 		297

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 549
1 2 3 4 5 6 range
A 883.4
(0.3)
P 		886.8
(0.4)
P 		843.3
(-0.4)
P 		1022.4
(3)
P 		710
(-3)
P 		868.3
(0)
P 		312
B 846.7
(-0.1)
P 		1026.3
(3)
P 		995.3
(2.5)
P 		938.5
(1.5)
P 		674.8
(-3)
P 		731.4
(-2)
P 		352
C 793.2
(-1.3)
P 		869.7
(-0.5)
P 		1034.6
(1.3)
P 		1186.5
(3)
P 		637.7
(-3)
P 		860.1
(-0.6)
P 		549
avr 841.1
(-0.3) 		927.6
(1.1) 		957.7
(1.5) 		1049.1
(3) 		674.2
(-3) 		819.9
(-0.7) 		375
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 234
1 2 3 4 range
A 314.2
(3)
P 		131.3
(-1.8)
P 		175.2
(-0.6)
P 		83.3
(-3)
P 		231
B 245.2
(3)
P 		143.1
(-1.7)
P 		141.6
(-1.8)
P 		115
(-3)
P 		130
C 278.9
(3)
P 		170.3
(-0.3)
P 		234.1
(1.6)
P 		80
(-3)
P 		199
avr 279.4
(3) 		148.2
(-1.2) 		183.6
(-0.1) 		92.8
(-3) 		187

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 179
1 2 3 4 5 6 range
A 162.8
(-3)
P 		315.4
(3)
P 		183.6
(-2.2)
P 		259.3
(0.8)
P 		214.2
(-1)
P 		211.4
(-1.1)
P 		153
B 294.6
(0.2)
P 		341.6
(3)
P 		241.7
(-3)
P 		248.6
(-2.6)
P 		274.1
(-1.1)
P 		272.7
(-1.1)
P 		100
C 294
(3)
P 		265.4
(1)
P 		263.3
(0.9)
P 		238.6
(-0.8)
P 		206.3
(-3)
P 		287.9
(2.6)
P 		88
avr 250.5
(-1.4) 		307.5
(3) 		229.5
(-3) 		248.8
(-1.5) 		231.5
(-2.8) 		257.3
(-0.9) 		78
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177563_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2932
Sequence Type Exemplar sequence
Representative Public ID T01E8.5 NCBI
Target Description T01E8.5 /REP_DB=WormBase Gene ID /WP=CE18165 /TR=Q20749 /GB=CAA88749.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063808(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063808 NCBI Caenorhabditis elegans T01E8.5 (T01E8.5) mRNA, complete cds. 11/11 None
T01E8.5 ENSEMBL cdna:known chromosome:CEL140:II:10242512:10247548:-1 gene:T01E8.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10242715-10247517(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T01E8.5
Entrez Gene 174589 Entrez gene
SwissProt Q20749 EMBL-EBI
WormBase CE18165 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88749 Hypothetical protein T01E8.5 [Caenorhabditis elegans] emb|CAA88473.1| Hypothetical protein T01E8.5 [Caenorhabditis elegans] ref|NP_496209.1| T01E8.5 [Caenorhabditis elegans] 0.0
blast CAE72902 Hypothetical protein CBG20217 [Caenorhabditis briggsae] 1.0E-134
blast AAH70786 MGC83828 protein [Xenopus laevis] 3.0E-17
Sequence
Target Sequence 
>C. ELEGANS:177563_S_AT
aaaaacaccgtttcatctacaatgaaaacttcaaaaagttgatcttccaagcatcgcaag
cgttcccatgtgattcgaaatatgcgaagatgctcggcgagctgcattccagcggtcgtc
tgcaagtgatgaagcttcaaggattcaccgacagcagaaatagtattttgaatgcgaaac
gagatcagcaatttgatccagaacttgaaactcgtcttctcatgaactcgttgactatta
tgttctcttggatgaatgcagccaaccggattggagacgccggaaatcaaatcctctata
aaaattggaaacgagaagcagctaatacacgtgatccggctatctggagacaagttataa
gagttgccagtaaattgtcacagaagattctaaaggacgatgcttacactcgtgcaagag
gtcaatgtacatgggctctcaatttgcactt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAAACACCGTTTCATCTACAATGA 642 129 3206 Antisense
GTTGATCTTCCAAGCATCGCAAGCG 608 437 3243 Antisense
TCGCAAGCGTTCCCATGTGATTCGA 95 601 3259 Antisense
CATTCCAGCGGTCGTCTGCAAGTGA 354 215 3310 Antisense
AAACTCGTCTTCTCATGAACTCGTT 453 127 3413 Antisense
ACTCGTTGACTATTATGTTCTCTTG 542 99 3431 Antisense
GCAGCCAACCGGATTGGAGACGCCG 293 315 3463 Antisense
GAGACGCCGGAAATCAAATCCTCTA 15 395 3479 Antisense
GAAGCAGCTAATACACGTGATCCGG 314 341 3520 Antisense
ACGTGATCCGGCTATCTGGAGACAA 556 95 3534 Antisense
GTACATGGGCTCTCAATTTGCACTT 273 461 3632 Antisense
Sequence Source Affymetrix Proprietary Database