[Home] | [Total List]

[177562_at]

Description T26E4.3 /REP_DB=WormBase Gene ID /WP=CE16475 /TR=O45837 /GB=CAB03432.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 62      4grp_total > 52      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 44.1
(3)
P 		40.2
(0.9)
A 		32.7
(-3)
A 		39.4
(0.5)
A 		11
B 59
(2.3)
A 		65.4
(3)
A 		64.5
(2.9)
A 		9.5
(-3)
A 		56
C 62.2
(3)
P 		54.9
(0.8)
A 		42.4
(-3)
A 		58
(1.7)
A 		20
avr 55.1
(3) 		53.5
(2.5) 		46.5
(0.4) 		35.6
(-3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 21.1
(0.5)
A 		19.6
(0.2)
A 		29.7
(2.7)
A 		27.7
(2.2)
A 		6.7
(-3)
A 		31.1
(3)
A 		24
B 10.6
(-3)
A 		44.2
(2.4)
A 		41.6
(2)
A 		25.1
(-0.7)
A 		47.8
(3)
A 		19.9
(-1.5)
A 		37
C 5.9
(-2.6)
A 		25.2
(0.5)
A 		40.9
(3)
A 		28.4
(1)
A 		3.7
(-3)
A 		4.7
(-2.8)
A 		37
avr 12.5
(-3) 		29.7
(1.1) 		37.4
(3) 		27.1
(0.5) 		19.4
(-1.3) 		18.6
(-1.5) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 16.1
(3)
P 		8.7
(-1.3)
A 		8.5
(-1.4)
A 		5.8
(-3)
A 		10
B 18.8
(3)
A 		16.1
(2)
A 		14.9
(1.6)
A 		2
(-3)
A 		17
C 20.6
(3)
P 		15.8
(0.3)
A 		14.8
(-0.2)
A 		9.8
(-3)
A 		11
avr 18.5
(3) 		13.5
(0.6) 		12.7
(0.2) 		5.9
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 3.9
(-1)
A 		7
(2.4)
A 		6.5
(1.8)
A 		7
(2.4)
A 		2
(-3)
A 		7.6
(3)
A 		6
B 3.7
(-3)
A 		14.7
(1.2)
A 		10.1
(-0.6)
A 		6.7
(-1.9)
A 		19.4
(3)
A 		7.4
(-1.6)
A 		16
C 2.2
(-2.3)
A 		7.7
(1.2)
A 		10.4
(3)
A 		5.7
(-0.1)
A 		1.2
(-3)
A 		1.6
(-2.7)
A 		9
avr 3.3
(-3) 		9.8
(3) 		9
(2.3) 		6.5
(-0) 		7.5
(0.9) 		5.5
(-1) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177562_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13270
Sequence Type Exemplar sequence
Representative Public ID T26E4.3 NCBI
Target Description T26E4.3 /REP_DB=WormBase Gene ID /WP=CE16475 /TR=O45837 /GB=CAB03432.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074532(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074532 NCBI Caenorhabditis elegans T26E4.3 (T26E4.3) mRNA, complete cds. 10/11 None
GENEFINDER00000017613 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15785378:15786988:1 10/11 None
T26E4.3 ENSEMBL cdna:known chromosome:CEL140:V:15785709:15787054:1 gene:T26E4.3 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000017591 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15785708-15787054(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T26E4.3
Entrez Gene 188929 Entrez gene
SwissProt O45837 EMBL-EBI
WormBase CE36210 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
5975 carbohydrate metabolism inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5794 Golgi apparatus inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8107 galactoside 2-alpha-L-fucosyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03432 Hypothetical protein T26E4.3 [Caenorhabditis elegans] ref|NP_506933.2| T26E4.3 [Caenorhabditis elegans] 1.0E-152
blast CAB03432 Hypothetical protein T26E4.3 [Caenorhabditis elegans] ref|NP_506933.2| T26E4.3 [Caenorhabditis elegans] 1.0E-128
blast CAB16868 Hypothetical protein F08A8.5 [Caenorhabditis elegans] ref|NP_493265.1| F08A8.5 [Caenorhabditis elegans] 7.0E-96
blast CAE63474 Hypothetical protein CBG07941 [Caenorhabditis briggsae] 3.0E-84
blast CAB16868 Hypothetical protein F08A8.5 [Caenorhabditis elegans] ref|NP_493265.1| F08A8.5 [Caenorhabditis elegans] 8.0E-81
blast CAA21488 Hypothetical protein T26H5.8 [Caenorhabditis elegans] emb|CAB04857.1| Hypothetical protein T26H5.8 [Caenorhabditis elegans] ref|NP_506839.1| T26H5.8 [Caenorhabditis elegans] 3.0E-77
Protein Domains
Database ID Description E-Value
Pfam IPR002516 EMBL-EBI Glycosyl transferase, family 11 5.9E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000017613 1 7-26
Sequence
Target Sequence 
>C. ELEGANS:177562_AT
aaatgctgcatgttcgatgatccgaagaaacttcaatccctcaaagatcagtacctcatt
ctggaaggccattattttcagagctacaagtttttccaccatttacgttctcaaatccgt
gattggctagctccgagtaaacgtatggcactgaaagcagcggcagtgattcctgaaaaa
tctaaaaatgatttcataatctgcactcatatacatcgtggagaaccgccatacaacaac
catcggaagccttcggatcctcgattcacacgagtagctactgaatatctagttgatatt
tgttggtcgcagcaccattttgcgggttgtactaaccgatttttttcagatgaaaagtct
cattcaaggatttctgtagtagtactgggtgatgatctgaattttgtgaacgaagtgttt
acaccaccaacgtcaacgttcggctggtggctggcgtacttggctaaaaaagaagctgta
atttattatagggatattgaagattccaaagatgaagtgctccgagagctcgagccagta
gattacta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATGCTGCATGTTCGATGATCCGA 173 119 244 Antisense
TCCCTCAAAGATCAGTACCTCATTC 447 597 280 Antisense
TTCAGAGCTACAAGTTTTTCCACCA 543 685 320 Antisense
TCCACCATTTACGTTCTCAAATCCG 316 587 338 Antisense
TCCGTGATTGGCTAGCTCCGAGTAA 300 595 359 Antisense
GAAAGCAGCGGCAGTGATTCCTGAA 468 359 396 Antisense
ACAACAACCATCGGAAGCCTTCGGA 156 111 476 Antisense
CCTTCGGATCCTCGATTCACACGAG 48 271 493 Antisense
GCAGCACCATTTTGCGGGTTGTACT 540 313 552 Antisense
CCAACGTCAACGTTCGGCTGGTGGC 106 271 670 Antisense
GAGAGCTCGAGCCAGTAGATTACTA 433 395 767 Antisense
Sequence Source Affymetrix Proprietary Database