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[177561_at]

Description C16D6.3 /REP_DB=WormBase Gene ID /WP=CE08232 /TR=O62064 /GB=CAB03890.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 66      4grp_total > 18      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 2.1
(-3)
A 		8.1
(3)
A 		4.6
(-0.5)
A 		7.5
(2.4)
A 		6
B 2.5
(-3)
A 		8.3
(3)
A 		3.5
(-2)
A 		4.6
(-0.8)
A 		6
C 4.1
(-2.5)
A 		4.3
(-2.5)
A 		2
(-3)
A 		27.8
(3)
A 		26
avr 2.9
(-3) 		6.9
(-0.7) 		3.4
(-2.7) 		13.3
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 7.3
(-2.4)
A 		4.7
(-2.9)
A 		5.9
(-2.7)
A 		3.9
(-3)
A 		4.8
(-2.9)
A 		40.1
(3)
A 		36
B 4.9
(-0)
A 		8.6
(3)
A 		4
(-0.8)
A 		3.1
(-1.5)
A 		2
(-2.4)
A 		1.3
(-3)
A 		7
C 1.7
(-3)
A 		11
(1.2)
A 		2.3
(-2.7)
A 		15
(3)
A 		2
(-2.9)
A 		4.8
(-1.6)
A 		13
avr 4.6
(-2.2) 		8.1
(-0.5) 		4.1
(-2.4) 		7.3
(-0.9) 		2.9
(-3) 		15.4
(3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 0.8
(-3)
A 		1.8
(3)
A 		1.2
(-0.6)
A 		1.1
(-1.2)
A 		1
B 0.8
(-3)
A 		2
(3)
A 		0.8
(-3)
A 		1
(-2)
A 		1
C 1.4
(-2)
A 		1.2
(-2.3)
A 		0.7
(-3)
A 		4.7
(3)
A 		4
avr 1
(-2.6) 		1.7
(0.4) 		0.9
(-3) 		2.3
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 1.4
(-2.7)
A 		1.7
(-2.5)
A 		1.3
(-2.8)
A 		1
(-3)
A 		1.4
(-2.7)
A 		9.8
(3)
A 		9
B 1.7
(0)
A 		2.9
(3)
A 		1
(-1.8)
A 		0.8
(-2.3)
A 		0.8
(-2.3)
A 		0.5
(-3)
A 		2
C 0.6
(-3)
A 		3.4
(3)
A 		0.6
(-3)
A 		3
(2.1)
A 		0.7
(-2.8)
A 		1.6
(-0.9)
A 		3
avr 1.2
(-2.6) 		2.7
(0.4) 		1
(-3) 		1.6
(-1.8) 		1
(-3) 		4
(3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177561_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16838
Sequence Type Exemplar sequence
Representative Public ID C16D6.3 NCBI
Target Description C16D6.3 /REP_DB=WormBase Gene ID /WP=CE08232 /TR=O62064 /GB=CAB03890.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077699(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077699 NCBI Caenorhabditis elegans C16D6.3 (C16D6.3) mRNA, complete cds. 11/11 None
C16D6.3 ENSEMBL cdna:known chromosome:CEL140:X:12526580:12527206:1 gene:C16D6.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000035346 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12526579-12527206(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C16D6.3
Entrez Gene 182685 Entrez gene
SwissProt O62064 EMBL-EBI
WormBase CE08232 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03890 Hypothetical protein C16D6.3 [Caenorhabditis elegans] ref|NP_510100.1| C16D6.3 [Caenorhabditis elegans] 4.0E-75
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510100.1 1 117-139
C16D6.3 1 117-139
Sequence
Target Sequence 
>C. ELEGANS:177561_AT
gggaaggaaattctcctcttcctctgtctcccgagtcaggcccatttgaagagcgtcttt
tggtgctggtcatcctgcggaccgccttgcattaccttggagaagccggacaaaacgagg
ttgcgcagcaatcagttttagaacgactggaaaaaaagaaagagcatgcgaatgtcagaa
agtggttgtgggataccgaaatgaatggaaggactctgaaaaagaattccgttcctaacc
agaggaattttgagtggaggcgatttatggttgagtatgatagttgtcgattggagaata
aagaagaggaaacaataaaaaaaggttcacatcgtgtattttccctaatatttcttttca
t

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGAAGGAAATTCTCCTCTTCCTCT 481 489 26 Antisense
GAGTCAGGCCCATTTGAAGAGCGTC 62 401 58 Antisense
GAAGAGCGTCTTTTGGTGCTGGTCA 437 339 73 Antisense
CCGCCTTGCATTACCTTGGAGAAGC 699 261 107 Antisense
GCCGGACAAAACGAGGTTGCGCAGC 567 283 130 Antisense
GTTGCGCAGCAATCAGTTTTAGAAC 44 441 145 Antisense
GAATTCCGTTCCTAACCAGAGGAAT 284 323 249 Antisense
GAGTGGAGGCGATTTATGGTTGAGT 655 401 277 Antisense
GAGTATGATAGTTGTCGATTGGAGA 196 399 298 Antisense
GGTTCACATCGTGTATTTTCCCTAA 271 507 349 Antisense
TATTTTCCCTAATATTTCTTTTCAT 176 663 362 Antisense
Sequence Source Affymetrix Proprietary Database