[Home] | [Total List]

[177560_at]

Description K03D7.7 /REP_DB=WormBase Gene ID /WP=CE16221 /TR=O45652 /GB=CAB04556.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 61      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 9.6
(-1.4)
A 		26.3
(3)
A 		11.2
(-1)
A 		3.7
(-3)
A 		23
B 35.5
(3)
A 		4.9
(-2.6)
A 		19.7
(0.1)
A 		2.9
(-3)
A 		33
C 5
(-3)
A 		5.6
(-1.8)
A 		5.7
(-1.6)
A 		8.1
(3)
A 		3
avr 16.7
(3) 		12.3
(0.8) 		12.2
(0.7) 		4.9
(-3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 5.3
(-2.6)
A 		3
(-3)
A 		13.1
(-1.4)
A 		9
(-2)
A 		40
(3)
A 		29.8
(1.3)
A 		37
B 15
(2.1)
A 		5
(-2.3)
A 		6.5
(-1.7)
A 		3.5
(-3)
A 		16.9
(3)
A 		11.2
(0.4)
A 		13
C 3.2
(-2.8)
A 		47.1
(3)
A 		34.3
(1.3)
A 		33.5
(1.2)
A 		2.3
(-2.9)
A 		1.4
(-3)
A 		46
avr 7.8
(-3) 		18.4
(2.3) 		18
(2.1) 		15.3
(0.8) 		19.7
(3) 		14.1
(0.2) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 3.5
(0.5)
A 		5.7
(3)
A 		2.9
(-0.2)
A 		0.5
(-3)
A 		5
B 11.3
(3)
A 		1.2
(-2.7)
A 		4.6
(-0.8)
A 		0.6
(-3)
A 		11
C 1.6
(-1)
A 		1.6
(-1)
A 		2
(3)
A 		1.4
(-3)
A 		1
avr 5.5
(3) 		2.8
(-0.4) 		3.2
(0.1) 		0.8
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 1
(-3)
A 		1.1
(-2.9)
A 		2.9
(-2)
A 		2.3
(-2.3)
A 		12.1
(3)
A 		7.3
(0.4)
A 		11
B 5.2
(1.3)
A 		1.7
(-2.2)
A 		1.6
(-2.3)
A 		0.9
(-3)
A 		6.9
(3)
A 		4.2
(0.3)
A 		6
C 1.2
(-2.7)
A 		14.4
(3)
A 		8.7
(0.5)
A 		6.7
(-0.3)
A 		0.7
(-2.9)
A 		0.5
(-3)
A 		14
avr 2.5
(-3) 		5.7
(1.7) 		4.4
(-0.2) 		3.3
(-1.8) 		6.6
(3) 		4
(-0.8) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177560_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13233
Sequence Type Exemplar sequence
Representative Public ID K03D7.7 NCBI
Target Description K03D7.7 /REP_DB=WormBase Gene ID /WP=CE16221 /TR=O45652 /GB=CAB04556.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075031(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075031 NCBI Caenorhabditis elegans K03D7.7 (K03D7.7) mRNA, complete cds. 11/11 None
GENEFINDER00000027365 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17494241:17496408:-1 11/11 None
K03D7.7 ENSEMBL cdna:known chromosome:CEL140:V:17494231:17496408:-1 gene:K03D7.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000027355 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17494230-17496408(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K03D7.7
Entrez Gene 186946 Entrez gene
SwissProt O45652 EMBL-EBI
WormBase CE16221 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04556 Hypothetical protein K03D7.7 [Caenorhabditis elegans] ref|NP_507432.1| K03D7.7 [Caenorhabditis elegans] 0.0
blast CAI79212 Hypothetical protein K10G4.10 [Caenorhabditis elegans] ref|NP_001024050.1| K10G4.10 [Caenorhabditis elegans] 1.0E-110
blast CAI79212 Hypothetical protein K10G4.10 [Caenorhabditis elegans] ref|NP_001024050.1| K10G4.10 [Caenorhabditis elegans] 1.0E-109
blast CAB07182 Hypothetical protein F09C3.4 [Caenorhabditis elegans] ref|NP_493496.1| F09C3.4 [Caenorhabditis elegans] 4.0E-31
blast CAB07182 Hypothetical protein F09C3.4 [Caenorhabditis elegans] ref|NP_493496.1| F09C3.4 [Caenorhabditis elegans] 1.0E-30
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 5.6E-16
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 6.8E-11
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 5.6E-16
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 6.8E-11
Sequence
Target Sequence 
>C. ELEGANS:177560_AT
tgaaatctgctacggacataattccgtttctttgaaaattgttaagaaacgtatagagta
tcgtgaactcgaggaacattgcctagtgtcataccagaatcaggcaaaagctatagtaga
ggagaatccagagagtatgatgctcaacgacgtagccgttctgttacaaagctctaacgt
tcagctggatagattcagcttgactatgggaaattggggatctggcaaggtgccagatat
cacctcaattcagaacattttgaaatcgagaaaacttctgcgcagtaaaagtgtatactt
tgaattcgtcaacatcgaaaatgtctcttcttttttgcaacactttaaagctggttttct
tgagagcatgagtttagacttacctgacatatattgtaaggattttcaatttggagatat
ggtccatttagaacagtgggagaaactcaaaaaactctcaattcaattttgtcgagagac
gcagccaacgaggctccttccattcattcatcatattcctaatgtggaaatttccaattt
gagatttcgggcactga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAATCTGCTACGGACATAATTCC 496 569 489 Antisense
GGAACATTGCCTAGTGTCATACCAG 523 529 561 Antisense
GTATGATGCTCAACGACGTAGCCGT 160 453 623 Antisense
GTAGCCGTTCTGTTACAAAGCTCTA 334 457 640 Antisense
GAAATTGGGGATCTGGCAAGGTGCC 95 361 698 Antisense
GCCAGATATCACCTCAATTCAGAAC 286 279 720 Antisense
ATGTCTCTTCTTTTTTGCAACACTT 381 49 809 Antisense
GAGCATGAGTTTAGACTTACCTGAC 409 389 852 Antisense
TGTCGAGAGACGCAGCCAACGAGGC 710 555 958 Antisense
TCCTTCCATTCATTCATCATATTCC 62 593 983 Antisense
TCCAATTTGAGATTTCGGGCACTGA 612 587 1021 Antisense
Sequence Source Affymetrix Proprietary Database