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[177559_at]

Description K03D3.4 /REP_DB=WormBase Gene ID /WP=CE16210 /TR=O45642 /GB=CAB05241.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 55      4grp_total > 24      6grp_cgc > 46      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 24.6
(1.8)
A 		27.7
(2.8)
A 		28.3
(3)
A 		9.4
(-3)
A 		19
B 17.7
(-3)
A 		17.5
(-3)
A 		53.4
(3)
A 		35.6
(0)
A 		36
C 19.3
(-2.6)
A 		16.4
(-3)
A 		18.5
(-2.7)
A 		65.3
(3)
P 		49
avr 20.5
(-3) 		20.5
(-3) 		33.4
(1.7) 		36.8
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 38.7
(1.4)
A 		4.9
(-2.9)
A 		49.4
(2.8)
P 		4.4
(-3)
A 		4.3
(-3)
A 		50.8
(3)
P 		47
B 10.7
(-3)
A 		28
(3)
A 		22.6
(1.1)
A 		19.1
(-0.1)
A 		16
(-1.2)
M 		16.9
(-0.8)
A 		17
C 12.4
(-1.3)
A 		21.6
(3)
A 		8.7
(-3)
A 		10.2
(-2.3)
A 		15.6
(0.2)
A 		18.1
(1.4)
A 		13
avr 20.6
(0.2) 		18.2
(-0.6) 		26.9
(2.4) 		11.2
(-3) 		12
(-2.7) 		28.6
(3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 9
(3)
A 		6
(0.6)
A 		7.4
(1.7)
A 		1.4
(-3)
A 		8
B 5.6
(-2)
A 		4.3
(-3)
A 		12.4
(3)
A 		7.6
(-0.6)
A 		8
C 6.4
(-1.4)
A 		4.7
(-3)
A 		6.4
(-1.4)
A 		11
(3)
P 		6
avr 7
(0.2) 		5
(-3) 		8.7
(3) 		6.7
(-0.2) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 7.1
(0.2)
A 		1.7
(-2.7)
A 		10.8
(2.2)
P 		1.1
(-3)
A 		1.3
(-2.9)
A 		12.4
(3)
P 		11
B 3.7
(-3)
A 		9.3
(3)
A 		5.5
(-1.1)
A 		5.1
(-1.5)
A 		6.5
(-0)
M 		6.3
(-0.2)
A 		6
C 4.6
(0.3)
A 		6.6
(3)
A 		2.2
(-2.9)
A 		2.1
(-3)
A 		5.1
(1)
A 		6.1
(2.3)
A 		5
avr 5.1
(-0.5) 		5.9
(0.4) 		6.2
(0.7) 		2.8
(-3) 		4.3
(-1.4) 		8.3
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177559_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10294
Sequence Type Exemplar sequence
Representative Public ID K03D3.4 NCBI
Target Description K03D3.4 /REP_DB=WormBase Gene ID /WP=CE16210 /TR=O45642 /GB=CAB05241.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028097(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028097 NCBI Caenorhabditis elegans K03D3.11 (K03D3.11) mRNA, complete cds. 11/11 None
K03D3.11 ENSEMBL cdna:known chromosome:CEL140:IV:16324003:16324934:1 gene:K03D3.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000040351 6/11 Cross Hyb Matching Probes None
GENEFINDER00000040358 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16322257-16324940(+) 76.41 98.12
Public Domain and Genome References
Gene Title
Gene Symbol srz-104
Ensembl K03D3.11
Entrez Gene 3565349 Entrez gene
SwissProt Q5WRL6 EMBL-EBI
WormBase CE37530 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAH60784 Hypothetical protein K03D3.11 [Caenorhabditis elegans] ref|NP_001023268.1| K03D3.11 [Caenorhabditis elegans] 1.0E-128
Protein Domains
Database ID Description E-Value
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 7.7E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001023268.1 6 20-42,52-74,81-98,108-130,158-177,212-234
K03D3.11 6 20-42,52-74,81-98,108-130,158-177,212-234
Sequence
Target Sequence 
>C. ELEGANS:177559_AT
gatggctatctgtaatttccttgtaattgtagctgcgctcctgttcctcaccgcttttag
aggcgcatttgattttcttgttgttttatcaagtatccaaattagcctactttacttttt
tccggcgattgaaggaacactaacgaaaattcagaacttggttatccgcttcattcttat
aatatactttttgtgtggtttcatggggatgacaagaatagctttaacgtacggtaaaga
tgtgctgaggggcttaccagacggcacaagtttagtcaagattcgagatgttgtctatat
ggaaacttttgtactcaacgggatttttctcttttcatcgataattaatttcttgggcat
catcggagaacatcctaagttgcagaagtacatgttctgtcagtcatttcttgtatttat
cgagaaaacgataagctccatttatatcactgacgattactgggattttacctttctctt
catagtcgatcttttcacattaccatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGGCTATCTGTAATTTCCTTGTA 683 405 612 Antisense
TCCTTGTAATTGTAGCTGCGCTCCT 582 591 629 Antisense
GTTCCTCACCGCTTTTAGAGGCGCA 595 437 654 Antisense
GAGGCGCATTTGATTTTCTTGTTGT 660 405 671 Antisense
CAGAACTTGGTTATCCGCTTCATTC 668 203 763 Antisense
GATGTGCTGAGGGGCTTACCAGACG 186 409 850 Antisense
CTCAACGGGATTTTTCTCTTTTCAT 224 225 925 Antisense
AAGCTCCATTTATATCACTGACGAT 450 149 1044 Antisense
GATTACTGGGATTTTACCTTTCTCT 319 425 1066 Antisense
ACCTTTCTCTTCATAGTCGATCTTT 575 87 1081 Antisense
TAGTCGATCTTTTCACATTACCATT 222 651 1094 Antisense
Sequence Source Affymetrix Proprietary Database