[Home] | [Total List]

[177558_at]

Description F41E7.2 /REP_DB=WormBase Gene ID /WP=CE03302 /TR=Q20274 /GB=CAA92125.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 60      6grp_high1_10_10 > 07      4grp_highest_8_8 > 39      4grp_high_8_8 > 03      6grp_highest_nonorm > 80      6grp_total > 07      4grp_total > 13      6grp_highest_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 929
1 2 3 4 range
A 652.3
(1)
P 		314.1
(-1.6)
P 		128.2
(-3)
P 		923.2
(3)
P 		795
B 411.9
(-1.4)
P 		237.2
(-2.7)
P 		186.5
(-3)
P 		1057.1
(3)
P 		871
C 613.6
(-0.1)
P 		278.4
(-3)
P 		301.6
(-2.8)
P 		964.6
(3)
P 		686
avr 559.3
(-0.3) 		276.6
(-2.4) 		205.4
(-3) 		981.6
(3) 		776

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 319
1 2 3 4 5 6 range
A 301.2
(3)
P 		220.9
(0.5)
P 		179
(-0.7)
P 		145.1
(-1.8)
P 		132.5
(-2.2)
P 		104.8
(-3)
P 		196
B 423.6
(3)
P 		225.7
(-0.8)
P 		184.1
(-1.6)
P 		198.1
(-1.3)
P 		110.9
(-3)
P 		158.3
(-2.1)
P 		313
C 384.1
(3)
P 		235.3
(-0.5)
P 		147.3
(-2.6)
P 		193.4
(-1.5)
P 		190.6
(-1.6)
P 		131.8
(-3)
P 		252
avr 369.6
(3) 		227.3
(-0.6) 		170.1
(-2) 		178.9
(-1.8) 		144.7
(-2.7) 		131.6
(-3) 		238
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 204
1 2 3 4 range
A 237.5
(3)
P 		68.2
(-2)
P 		33.5
(-3)
P 		135.1
(-0)
P 		204
B 131.4
(-0.1)
P 		58.6
(-2.5)
P 		43.2
(-3)
P 		225.3
(3)
P 		182
C 203.1
(3)
P 		80
(-3)
P 		105.1
(-1.8)
P 		162.6
(1)
P 		123
avr 190.7
(3) 		68.9
(-2.6) 		60.6
(-3) 		174.3
(2.2) 		130

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 122
1 2 3 4 5 6 range
A 55.5
(0.4)
P 		78.6
(3)
P 		39
(-1.5)
P 		36.8
(-1.7)
P 		40
(-1.4)
P 		25.5
(-3)
P 		53
B 147.4
(3)
P 		75.1
(-1.2)
P 		44.7
(-3)
P 		52.5
(-2.5)
P 		45.1
(-3)
P 		59
(-2.2)
P 		103
C 142.4
(3)
P 		71.8
(-1)
P 		37.5
(-3)
P 		38.9
(-2.9)
P 		61.7
(-1.6)
P 		44.1
(-2.6)
P 		105
avr 115.1
(3) 		75.2
(-0.2) 		40.4
(-3) 		42.7
(-2.8) 		48.9
(-2.3) 		42.9
(-2.8) 		75
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177558_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16205
Sequence Type Exemplar sequence
Representative Public ID F41E7.2 NCBI
Target Description F41E7.2 /REP_DB=WormBase Gene ID /WP=CE03302 /TR=Q20274 /GB=CAA92125.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077322(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077322 NCBI Caenorhabditis elegans F41E7.2 (F41E7.2) mRNA, complete cds. 11/11 None
GENEFINDER00000016498 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10276995:10278569:1 11/11 None
F41E7.2.3 ENSEMBL cdna:known chromosome:CEL140:X:10273621:10278030:1 gene:F41E7.2 11/11 None
F41E7.2.1 ENSEMBL cdna:known chromosome:CEL140:X:10273816:10278140:1 gene:F41E7.2 11/11 None
F41E7.2.2 ENSEMBL cdna:known chromosome:CEL140:X:10273817:10278109:1 gene:F41E7.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000016487 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10277010-10278030(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F41E7.2
Entrez Gene 181235 Entrez gene
SwissProt Q20274 EMBL-EBI
WormBase CE30532 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.16862.1.S1_AT similar to CG10806-PB, isoform B cfa
CANINE_2:CFAAFFX.16862.1.S1_S_AT similar to CG10806-PB, isoform B cfa
MOE430A:1430233_A_AT RIKEN cDNA 4933425K02 gene mm
MOUSE430A_2:1430233_A_AT RIKEN cDNA 4933425K02 gene mm
MOUSE430_2:1430233_A_AT RIKEN cDNA 4933425K02 gene mm
MOE430B:1455891_AT RIKEN cDNA 4933425K02 gene mm
MOUSE430_2:1455891_AT RIKEN cDNA 4933425K02 gene mm
MG-U74CV2:168148_R_AT RIKEN cDNA 4933425K02 gene mm
MG-U74CV2:166209_F_AT RIKEN cDNA 4933425K02 gene mm
MOE430A:1454114_A_AT RIKEN cDNA 4933425K02 gene mm
MOUSE430A_2:1454114_A_AT RIKEN cDNA 4933425K02 gene mm
MOUSE430_2:1454114_A_AT RIKEN cDNA 4933425K02 gene mm
MOE430A:1431363_AT RIKEN cDNA 4933425K02 gene mm
MOUSE430A_2:1431363_AT RIKEN cDNA 4933425K02 gene mm
MOUSE430_2:1431363_AT RIKEN cDNA 4933425K02 gene mm
MOE430A:1432174_A_AT RIKEN cDNA 4933425K02 gene mm
MOUSE430A_2:1432174_A_AT RIKEN cDNA 4933425K02 gene mm
MOUSE430_2:1432174_A_AT RIKEN cDNA 4933425K02 gene mm
Protein Similarities
Method ID Description E-Value
blast CAA92125 Hypothetical protein F41E7.2 [Caenorhabditis elegans] emb|CAD30426.1| Hypothetical protein F41E7.2 [Caenorhabditis elegans] ref|NP_509723.2| F41E7.2 [Caenorhabditis elegans] 0.0
blast CAE70553 Hypothetical protein CBG17198 [Caenorhabditis briggsae] 0.0
blast CAA92125 Hypothetical protein F41E7.2 [Caenorhabditis elegans] emb|CAD30426.1| Hypothetical protein F41E7.2 [Caenorhabditis elegans] ref|NP_509723.2| F41E7.2 [Caenorhabditis elegans] 1.0E-127
blast CAE70553 Hypothetical protein CBG17198 [Caenorhabditis briggsae] 1.0E-101
Protein Domains
Database ID Description E-Value
Pfam IPR006153 EMBL-EBI Sodium/hydrogen exchanger 3.5E-5
Pfam IPR006153 EMBL-EBI Sodium/hydrogen exchanger 3.5E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509723.2 13 21-43,68-86,91-110,125-147,154-176,181-200,221-243,258-275,288-310,347-364,376-398,408-430,443-465
F41E7.2.3 13 21-43,68-86,91-110,125-147,154-176,181-200,221-243,258-275,288-310,347-364,376-398,408-430,443-465
F41E7.2.1 13 21-43,68-86,91-110,125-147,154-176,181-200,221-243,258-275,288-310,347-364,376-398,408-430,443-465
F41E7.2.2 13 21-43,68-86,91-110,125-147,154-176,181-200,221-243,258-275,288-310,347-364,376-398,408-430,443-465
GENEFINDER00000016498 5 2-24,43-60,72-94,104-126,139-161
Sequence
Target Sequence 
>C. ELEGANS:177558_AT
ttttcacttgttgggtacacctgagaattggaaaacagcgtttatcatcatagcagttgg
aagttcttttcggttgatttctgcaatgatcttatcgtattatggtcactttaatatcta
cgaacaaattattttggcattgaccttaatgccaaaagcgactgttcagtgtgcactggc
cccgtcactcatttttatgacaaacggtttcccggaactccgcgagcaaaccaaactaat
catcaacatttgcattaccgcagtgatggtgacaagtcctattgtggagatattattaga
tgttttggccccaagaatattgaaaattaaagaaggaacttcgacttacaacaggaacat
taccaactctactattcttgacgaaatggatccaaatctagagctgaagaagacatcgtc
atcgaatagcaccaacaacagcagaaccaatcttaataataggatcatctacgagttaaa
cccaaattttgtgccgatcagtatcgagaacggttattctcgagcttcatatcaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTCACTTGTTGGGTACACCTGAG 668 673 153 Antisense
ACAGCGTTTATCATCATAGCAGTTG 554 109 187 Antisense
AAGTTCTTTTCGGTTGATTTCTGCA 23 157 213 Antisense
GATCTTATCGTATTATGGTCACTTT 689 419 240 Antisense
GCGACTGTTCAGTGTGCACTGGCCC 284 287 310 Antisense
GAACTCCGCGAGCAAACCAAACTAA 372 347 367 Antisense
ATTATTAGATGTTTTGGCCCCAAGA 89 15 444 Antisense
ACAGGAACATTACCAACTCTACTAT 386 107 503 Antisense
ATCGTCATCGAATAGCACCAACAAC 636 35 567 Antisense
GGATCATCTACGAGTTAAACCCAAA 679 509 614 Antisense
GGTTATTCTCGAGCTTCATATCAAC 133 507 664 Antisense
Sequence Source Affymetrix Proprietary Database