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[177557_at]

Description W01C9.1 /REP_DB=WormBase Gene ID /WP=CE02367 /TR=Q23114 /GB=CAA90266.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 25      4grp_total > 25      6grp_total_sub > Decrease      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 41.1
(-3)
A 		110.1
(1.9)
A 		100
(1.2)
P 		125.4
(3)
P 		84
B 78.5
(-1.2)
A 		64.3
(-3)
A 		102.6
(1.8)
A 		112.4
(3)
A 		48
C 67.1
(-3)
M 		102.2
(0.9)
M 		79.1
(-1.7)
M 		121.1
(3)
P 		54
avr 62.2
(-3) 		92.2
(0.1) 		93.9
(0.3) 		119.6
(3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 89.7
(3)
A 		79.9
(2.1)
P 		87.1
(2.8)
P 		53.9
(-0.3)
A 		50.4
(-0.6)
A 		25
(-3)
A 		65
B 59.3
(-0.3)
P 		95.9
(3)
P 		62.9
(0)
M 		49.3
(-1.2)
A 		29.5
(-3)
P 		33.4
(-2.6)
A 		66
C 105.4
(3)
P 		94.9
(2.2)
P 		30.6
(-2.9)
A 		94
(2.1)
P 		29.2
(-3)
A 		81.6
(1.1)
A 		76
avr 84.8
(2.4) 		90.2
(3) 		60.2
(-0.3) 		65.7
(0.3) 		36.4
(-3) 		46.7
(-1.9) 		54
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 15
(-3)
A 		23.9
(1.8)
A 		26.1
(3)
P 		18.4
(-1.2)
P 		11
B 25
(3)
A 		15.9
(-3)
A 		23.8
(2.2)
A 		23.9
(2.3)
A 		9
C 22.2
(-1.8)
M 		29.4
(3)
M 		27.6
(1.8)
M 		20.4
(-3)
P 		9
avr 20.7
(-3) 		23.1
(-0.2) 		25.8
(3) 		20.9
(-2.8) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 16.5
(-0.2)
A 		28.4
(3)
P 		19
(0.5)
P 		13.7
(-1)
A 		15.2
(-0.6)
A 		6.1
(-3)
A 		22
B 20.6
(-0.4)
P 		31.9
(3)
P 		15.3
(-2)
M 		13.1
(-2.7)
A 		12
(-3)
P 		12.4
(-2.9)
A 		20
C 39.1
(3)
P 		29
(1.1)
P 		7.8
(-3)
A 		18.9
(-0.9)
P 		9.4
(-2.7)
A 		27.3
(0.7)
A 		31
avr 25.4
(1.5) 		29.8
(3) 		14
(-2.4) 		15.2
(-2) 		12.2
(-3) 		15.3
(-1.9) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177557_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3511
Sequence Type Exemplar sequence
Representative Public ID W01C9.1 NCBI
Target Description W01C9.1 /REP_DB=WormBase Gene ID /WP=CE02367 /TR=Q23114 /GB=CAA90266.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063401
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000001838 ENSEMBL cdna:SNAP chromosome:CEL140:II:8533123:8534063:-1 10/11 None
GENEFINDER00000001847 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8533123:8534285:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_063401 8/11 Cross Hyb Matching Probes None
W01C9.1 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8533119-8534282(-) 97.17 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90266 Hypothetical protein W01C9.1 [Caenorhabditis elegans] ref|NP_495802.2| W01C9.1 [Caenorhabditis elegans] 1.0E-122
blast CAA90266 Hypothetical protein W01C9.1 [Caenorhabditis elegans] ref|NP_495802.2| W01C9.1 [Caenorhabditis elegans] 6.0E-93
blast CAE57598 Hypothetical protein CBG00579 [Caenorhabditis briggsae] 6.0E-85
blast CAE57598 Hypothetical protein CBG00579 [Caenorhabditis briggsae] 1.0E-84
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000001847 1 67-89
Sequence
Target Sequence 
>C. ELEGANS:177557_AT
ggtatttctatatttcatctgcattataataattattattataagttctattatccaatg
ctttttctaattctcacagtttttgttggtgcccaggcggccaagaaaccaatgttcgac
gttcgacaattcaatttggacgaggtcggtgcatatcggactgatcagattacactggaa
cccgctccaaaacctccatttcttatcaatgccacctcagaagccattgaacagtttatg
gcaatatatcggactcctggaattgcacaaattcgaaaaatgacagaattagatgttcta
gttggaactttacgaacggaagtacaacaatcctataatgcatataaagcagaatcaatt
ctcttgaaattagctcaagatgaacggttacaggaaattgcggaaaagacgcattacaca
atcgtccacttgcaagctctgaaaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTATTTCTATATTTCATCTGCATT 661 505 178 Antisense
ATGCTTTTTCTAATTCTCACAGTTT 478 43 235 Antisense
CACAGTTTTTGTTGGTGCCCAGGCG 39 195 252 Antisense
GCCCAGGCGGCCAAGAAACCAATGT 141 287 268 Antisense
GAGGTCGGTGCATATCGGACTGATC 338 403 319 Antisense
ATCAGATTACACTGGAACCCGCTCC 4 27 341 Antisense
CTCCAAAACCTCCATTTCTTATCAA 530 233 362 Antisense
TTATCAATGCCACCTCAGAAGCCAT 580 679 380 Antisense
TATGGCAATATATCGGACTCCTGGA 526 655 414 Antisense
ACGCATTACACAATCGTCCACTTGC 152 91 586 Antisense
TCGTCCACTTGCAAGCTCTGAAAGA 601 605 599 Antisense
Sequence Source Affymetrix Proprietary Database